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Better practices using MultiQC in Quarto Notebooks for sets of images
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8
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160
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March 28, 2025
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Handling lots of IO (large files or lots of small files) on HPC systems
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1
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321
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December 18, 2023
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Pushing my first 'mulled' container with wave: quay.io and AWS ECR ✅
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7
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457
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October 21, 2023
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Looking for a way to trigger a Nextflow cleanup process (deleting input files) only after the entire workflow completes successfully—any ideas or best practices to handle this efficiently?
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8
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758
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August 20, 2025
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How to check of a channel is empty?
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6
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822
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April 25, 2024
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Docker: how to run a script within nextflow?
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7
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717
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January 22, 2024
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Nextflow - bash: /usr/local/bin/nextflow: Permission denied
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2
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1160
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November 14, 2023
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R script from bin folder isn't executed
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4
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503
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May 28, 2024
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Custom column on general stats table
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7
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359
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March 28, 2025
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With fusion based on (unlimited) object storage, how much of space is needed on the main OS itself?
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2
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321
|
November 14, 2023
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Is there a way to make custom/additional messages for resource exceeded errors?
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3
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470
|
January 3, 2024
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Deploying tower -agent on HPC without root access
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6
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347
|
December 5, 2023
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MultiQC on fastp results
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2
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922
|
December 6, 2023
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How to wait until all files are processed at a task for next step?
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6
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597
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February 12, 2024
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Input file name collision - There are multiple input files
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6
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579
|
April 25, 2024
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Nextflow configuration for sequential and parallel execution in multipod
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6
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568
|
January 2, 2024
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Make the ANSI output wider in non-interactive terminals
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2
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48
|
June 27, 2025
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Nf-core modules best practice
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6
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556
|
February 13, 2024
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Apptainer and nextflow
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4
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644
|
April 11, 2024
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Is it bad practice to try and 'pluck' files from an element in a channel that is a directory with channel manipulation?
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1
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312
|
October 27, 2023
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Nextflow language server errors
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7
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273
|
November 6, 2024
|
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Combining several MultiQC reports into one
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4
|
605
|
February 15, 2024
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Wave and Singularity
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8
|
439
|
October 24, 2023
|
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Nextflow Error
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5
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535
|
July 1, 2024
|
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Issues running available singularity container with Nextflow
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6
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489
|
April 8, 2024
|
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Managing GPU Resources in Nextflow Pipeline on PBSPro
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0
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217
|
June 12, 2024
|
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Fastp: not enough samples showing
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4
|
517
|
December 11, 2023
|
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Branching and splitting
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8
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379
|
October 6, 2023
|
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Bundling in tuple gives different results in process output vs. workflow
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5
|
463
|
March 19, 2024
|
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Periods not allowed in pipeline names
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3
|
312
|
December 4, 2024
|
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Not a valid path value type?
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6
|
410
|
July 13, 2024
|
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How to take the quiz?
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3
|
30
|
September 26, 2025
|
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My jobs are being canceled and logs are unable to be recovered
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5
|
417
|
July 29, 2025
|
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Invalid method invocation call with arguments
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5
|
411
|
August 3, 2024
|
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Using conda environments in singularity containers with nextflow
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4
|
441
|
September 17, 2024
|
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Dealing with executable docker image
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4
|
436
|
May 29, 2024
|
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Error on selecting a specific output from a process that outputs multiple files, and pass it to the next process?
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6
|
366
|
August 11, 2024
|
|
Cutandrun pipeline help :(
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7
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338
|
April 22, 2024
|
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How to pass a directory path as input and build a channel from it in nextflow?
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3
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479
|
January 14, 2025
|
|
Nextflow config to switching to GPU in nf-core/sarek pipeline
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3
|
152
|
August 8, 2025
|
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Nextflow debugging and browsing work directories
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3
|
463
|
December 5, 2023
|
|
PyPI package not found
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5
|
67
|
August 20, 2024
|
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Resume run with changed head job configuration
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6
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348
|
October 26, 2023
|
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Python module in process problem
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6
|
338
|
June 3, 2024
|
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Local container building with Singularity
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8
|
301
|
July 26, 2024
|
|
Include nf-validation in the "-all" nextflow binary
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4
|
399
|
October 27, 2023
|
|
Join and cross operators not behaving as expected
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4
|
220
|
May 30, 2024
|
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How to debug a task in the context of fusion
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4
|
391
|
November 29, 2023
|
|
Command error: `touch: .command.trace: Permission denied` when running on docker
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4
|
389
|
October 12, 2024
|
|
How to iterate over groupTuple data for processes?
|
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8
|
287
|
January 17, 2024
|