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Nextflow - bash: /usr/local/bin/nextflow: Permission denied
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2
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986
|
November 14, 2023
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With fusion based on (unlimited) object storage, how much of space is needed on the main OS itself?
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2
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310
|
November 14, 2023
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Docker: how to run a script within nextflow?
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7
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599
|
January 22, 2024
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How to check of a channel is empty?
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6
|
639
|
April 25, 2024
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Is there a way to make custom/additional messages for resource exceeded errors?
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3
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417
|
January 3, 2024
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Deploying tower -agent on HPC without root access
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6
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310
|
December 5, 2023
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Is it bad practice to try and 'pluck' files from an element in a channel that is a directory with channel manipulation?
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1
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297
|
October 27, 2023
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MultiQC on fastp results
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2
|
750
|
December 6, 2023
|
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How to wait until all files are processed at a task for next step?
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6
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483
|
February 12, 2024
|
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Custom column on general stats table
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7
|
246
|
March 28, 2025
|
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Nextflow configuration for sequential and parallel execution in multipod
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6
|
466
|
January 2, 2024
|
|
Wave and Singularity
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8
|
387
|
October 24, 2023
|
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Input file name collision - There are multiple input files
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6
|
434
|
April 25, 2024
|
|
Nf-core modules best practice
|
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6
|
434
|
February 13, 2024
|
|
Apptainer and nextflow
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4
|
501
|
April 11, 2024
|
|
Combining several MultiQC reports into one
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|
4
|
496
|
February 15, 2024
|
|
Branching and splitting
|
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8
|
351
|
October 6, 2023
|
|
Periods not allowed in pipeline names
|
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3
|
295
|
December 4, 2024
|
|
Issues running available singularity container with Nextflow
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6
|
396
|
April 8, 2024
|
|
Fastp: not enough samples showing
|
|
4
|
458
|
December 11, 2023
|
|
Looking for a way to trigger a Nextflow cleanup process (deleting input files) only after the entire workflow completes successfully—any ideas or best practices to handle this efficiently?
|
|
7
|
343
|
February 18, 2025
|
|
Nextflow Error
|
|
5
|
379
|
July 1, 2024
|
|
Nextflow language server errors
|
|
7
|
182
|
November 6, 2024
|
|
Bundling in tuple gives different results in process output vs. workflow
|
|
5
|
371
|
March 19, 2024
|
|
Local container building with Singularity
|
|
8
|
284
|
July 26, 2024
|
|
R script from bin folder isn't executed
|
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4
|
369
|
May 28, 2024
|
|
Resume run with changed head job configuration
|
|
6
|
305
|
October 26, 2023
|
|
Managing GPU Resources in Nextflow Pipeline on PBSPro
|
|
0
|
144
|
June 12, 2024
|
|
How to debug a task in the context of fusion
|
|
4
|
349
|
November 29, 2023
|
|
Include nf-validation in the "-all" nextflow binary
|
|
4
|
349
|
October 27, 2023
|
|
Using mv command in AWS environment with fusion
|
|
1
|
307
|
October 28, 2023
|
|
Adapting existing AWS Batch infrastructure to integrate the Fusion file system
|
|
3
|
369
|
November 2, 2023
|
|
Cutandrun pipeline help :(
|
|
7
|
258
|
April 22, 2024
|
|
Nextflow debugging and browsing work directories
|
|
3
|
365
|
December 5, 2023
|
|
Monitoring NF job status
|
|
5
|
296
|
November 30, 2023
|
|
How to iterate over groupTuple data for processes?
|
|
8
|
241
|
January 17, 2024
|
|
Command error: `touch: .command.trace: Permission denied` when running on docker
|
|
4
|
323
|
October 12, 2024
|
|
Python module in process problem
|
|
6
|
268
|
June 3, 2024
|
|
Tearing down a orchestration before completion of the workflow
|
|
3
|
197
|
January 6, 2024
|
|
Dealing with executable docker image
|
|
4
|
314
|
May 29, 2024
|
|
Simple Bash Computing environment
|
|
5
|
284
|
September 13, 2024
|
|
AWS Batch cannot determine region of bucket
|
|
4
|
308
|
January 30, 2024
|
|
Not a valid path value type?
|
|
6
|
258
|
July 13, 2024
|
|
Dynamically change button name for reports that have percentages and counts/number_of_reads
|
|
4
|
167
|
March 7, 2024
|
|
Automatic vs. manual IAM policies for S3 bucket read/write
|
|
6
|
250
|
February 15, 2024
|
|
PyPI package not found
|
|
5
|
48
|
August 20, 2024
|
|
How to view all multi map data at once?
|
|
7
|
230
|
March 26, 2024
|
|
Workflow unable to find input from Seqera Datasets
|
|
6
|
242
|
March 20, 2024
|
|
multiMap doesn't work in our pipeline with NXF 24.01.0-edge
|
|
3
|
180
|
February 13, 2024
|
|
Expiring GitHub Tokens on Seqera Platform
|
|
1
|
254
|
August 29, 2024
|