# My rnaseq pipeline seems to run, but I am not seeing any results folder after running fastqc

**URL:** <https://community.seqera.io/t/my-rnaseq-pipeline-seems-to-run-but-i-am-not-seeing-any-results-folder-after-running-fastqc/2407>\
**Category:** Ask for help\
**Tags:** nextflow, platform\
**Created:** [October 7, 2025, 8:53pm UTC](https://community.seqera.io/t/my-rnaseq-pipeline-seems-to-run-but-i-am-not-seeing-any-results-folder-after-running-fastqc/2407 "2025-10-07T20:53:39Z")\
**Posts on this page:** 2\
**Page:** 1

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**Author:** ![Roxy\_J](https://dub1.discourse-cdn.com/flex013/user_avatar/community.seqera.io/roxy_j/32/1706_2.png) [@Roxy\_J](https://community.seqera.io/u/Roxy_J)\
**Post date:** [October 7, 2025, 8:53pm UTC](https://community.seqera.io/t/my-rnaseq-pipeline-seems-to-run-but-i-am-not-seeing-any-results-folder-after-running-fastqc/2407/1 "2025-10-07T20:53:39Z")

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I am testing my pipeline with the nf4-science training module. After writing my fastqc.nf script and run the pipeline, I am getting something like:

N E X T F L O W ~ version 25.04.3

Launching `rnaseq.nf` [trusting\_engelbart] DSL2 - **revision: b7d2fbf4c6**

And my results folder and output folder are nowhere to be found. Does anyone knows what could be happening?

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<div class="post-metadata">

**Author:** ![gshumkov](https://dub1.discourse-cdn.com/flex013/user_avatar/community.seqera.io/gshumkov/32/2138_2.png) [@gshumkov](https://community.seqera.io/u/gshumkov)\
**Post date:** [October 19, 2025, 9:50am UTC](https://community.seqera.io/t/my-rnaseq-pipeline-seems-to-run-but-i-am-not-seeing-any-results-folder-after-running-fastqc/2407/2 "2025-10-19T09:50:01Z")

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> [@Roxy\_J](#):
>
> nf4-science training module

Hey Roxy\_J!  
Could you please provide the following:

1. your fastqc.nf file
2. how do you use the module (with github codespaces or local installation)?