Topics tagged nf-core

Topic	Replies	Views	Activity
Issue running nf-core/rnaseq on SLURM via Seqera Platform — tools not found (exit code 127) Ask for help nextflow , nf-core , platform , seqera	1	41	October 27, 2025
Awscli can't find libz share object file when running nextflow workflow on AWS Batch Ask for help aws , nf-core	3	125	October 13, 2025
Singularity error in downloaded pipeline Ask for help nf-core , singularity , seqera-containers	5	200	September 27, 2025
Nextflow Training Week - Sep 22-26, 2025 Training nextflow , nf-core	5	308	September 23, 2025
Nf-core Hackathon in Barcelona Events nextflow , nf-core	0	51	September 17, 2025
RNAVAR nf-core pipeline: error on multiqc module Ask for help nextflow , nf-core	5	114	September 5, 2025
How to have more cpus or gpu? Ask for help nf-core	1	73	August 29, 2025
Is there a way to change the sorting behaviour in multiqc Ask for help multiqc , nf-core	2	81	August 22, 2025
Running atacseq/2.1.2/ offline, issue with nf-validation plugin Ask for help nextflow , nf-core	3	95	August 18, 2025
Run StrainPhlAn with output from nf-core/taxprofiler x MetaPhlAn? Ask for help nf-core	0	55	August 12, 2025
Nextflow config to switching to GPU in nf-core/sarek pipeline Ask for help nextflow , nf-core , platform	3	364	August 8, 2025
Need help to setup the nf-core-rnaseq with google cloud Ask for help nextflow , nf-core	1	80	July 30, 2025
Help passing a tuple with paths as input for a process without splitting the files (Invalid method invocation 'call' with arguments: ...) Ask for help nextflow , nf-core	3	102	July 7, 2025
Are the nextflow codespaces not working? Ask for help nextflow , nf-core	10	217	July 7, 2025
StackOverflowError when chaining modules for nf-test Ask for help nextflow , nf-core , nf-test	2	85	June 24, 2025
Handling large numbers of processes in an HPC Ask for help nextflow , hpc , nf-core	1	131	June 19, 2025
Define task.ext.args per subworkflow Ask for help nextflow , nf-core	2	155	June 17, 2025
Nf-core/rnaseq v3.18.0 – Minimum‑55‑CPU rule, account suspensions & debug‑queue limits Ask for help nextflow , hpc , nf-core	3	122	May 23, 2025
Nf-core/scrnaseq help Ask for help nf-core	0	57	May 6, 2025
MultiQC timing out Ask for help multiqc , nf-core	5	136	April 23, 2025
CADD1.7.2 Docker image for nextflow Ask for help nf-core	0	52	April 23, 2025
How to wait for a subworkflow to complete before proceeding to another subworkflow? Ask for help nextflow , nf-core	2	141	April 23, 2025
Oncoanalyser: Ask for help nextflow , nf-core	3	120	April 9, 2025
Nextflow Podcast Ep. 50: Imaging pipelines and analysis, with Krešimir Beštak Events nextflow , nf-core , nextflow-podcast	0	63	April 3, 2025
Nextflow Podcast Ep. 49: Finding novel proteins at Seanome, with Olga Botvinnik Events nextflow , nf-core , nextflow-podcast	0	64	March 17, 2025
Nextflow CPU limit does not take effect Ask for help nextflow , hpc , nf-core	0	84	March 25, 2025
Nextflow stalls after version check Ask for help nextflow , nf-core	6	152	March 19, 2025
Nfcore/rnaseq pipeline never finishes Ask for help aws , nf-core , platform	1	132	March 13, 2025
Own variant calling nextflow pipeline - error with Variant Recalibrator. Argument resource is missing Ask for help nextflow , nf-core	2	50	March 11, 2025
Upload to aws s3 fails Ask for help aws , nf-core	0	51	March 8, 2025