Topics tagged nf-core

Topic	Replies	Views	Activity
RUNNING of NF-CORE/VIRAL RECON with custom primers, reference sequence and bed files Ask for help nextflow , nf-core	4	131	November 9, 2025
Looking for a way to trigger a Nextflow cleanup process (deleting input files) only after the entire workflow completes successfully—any ideas or best practices to handle this efficiently? Ask for help nextflow , nf-core , platform	8	1318	November 18, 2025
Error optional input for process Ask for help nextflow , nf-core	1	63	November 11, 2025
Error when trying to pull container Ask for help nextflow , nf-core	2	157	October 31, 2025
Issue running nf-core/rnaseq on SLURM via Seqera Platform — tools not found (exit code 127) Ask for help nextflow , nf-core , platform , seqera	1	58	October 27, 2025
Awscli can't find libz share object file when running nextflow workflow on AWS Batch Ask for help aws , nf-core	3	139	October 13, 2025
Singularity error in downloaded pipeline Ask for help nf-core , singularity , seqera-containers	5	253	September 27, 2025
Nextflow Training Week - Sep 22-26, 2025 Training nextflow , nf-core	5	339	September 23, 2025
Nf-core Hackathon in Barcelona Events nextflow , nf-core	0	61	September 17, 2025
RNAVAR nf-core pipeline: error on multiqc module Ask for help nextflow , nf-core	5	132	September 5, 2025
How to have more cpus or gpu? Ask for help nf-core	1	98	August 29, 2025
Is there a way to change the sorting behaviour in multiqc Ask for help multiqc , nf-core	2	107	August 22, 2025
Running atacseq/2.1.2/ offline, issue with nf-validation plugin Ask for help nextflow , nf-core	3	128	August 18, 2025
Run StrainPhlAn with output from nf-core/taxprofiler x MetaPhlAn? Ask for help nf-core	0	75	August 12, 2025
Nextflow config to switching to GPU in nf-core/sarek pipeline Ask for help nextflow , nf-core , platform	3	427	August 8, 2025
Need help to setup the nf-core-rnaseq with google cloud Ask for help nextflow , nf-core	1	103	July 30, 2025
Help passing a tuple with paths as input for a process without splitting the files (Invalid method invocation 'call' with arguments: ...) Ask for help nextflow , nf-core	3	118	July 7, 2025
Are the nextflow codespaces not working? Ask for help nextflow , nf-core	10	263	July 7, 2025
StackOverflowError when chaining modules for nf-test Ask for help nextflow , nf-core , nf-test	2	99	June 24, 2025
Handling large numbers of processes in an HPC Ask for help nextflow , hpc , nf-core	1	152	June 19, 2025
Define task.ext.args per subworkflow Ask for help nextflow , nf-core	2	176	June 17, 2025
Nf-core/rnaseq v3.18.0 – Minimum‑55‑CPU rule, account suspensions & debug‑queue limits Ask for help nextflow , hpc , nf-core	3	150	May 23, 2025
Nf-core/scrnaseq help Ask for help nf-core	0	67	May 6, 2025
MultiQC timing out Ask for help multiqc , nf-core	5	157	April 23, 2025
CADD1.7.2 Docker image for nextflow Ask for help nf-core	0	58	April 23, 2025
How to wait for a subworkflow to complete before proceeding to another subworkflow? Ask for help nextflow , nf-core	2	162	April 23, 2025
Oncoanalyser: Ask for help nextflow , nf-core	3	201	April 9, 2025
Nextflow Podcast Ep. 50: Imaging pipelines and analysis, with Krešimir Beštak Events nextflow , nf-core , nextflow-podcast	0	64	April 3, 2025
Nextflow Podcast Ep. 49: Finding novel proteins at Seanome, with Olga Botvinnik Events nextflow , nf-core , nextflow-podcast	0	72	March 17, 2025
Nextflow CPU limit does not take effect Ask for help nextflow , hpc , nf-core	0	99	March 25, 2025