Topics tagged nf-core

Topic	Replies	Views	Activity
Running atacseq/2.1.2/ offline, issue with nf-validation plugin Ask for help nextflow , nf-core	3	79	August 18, 2025
Run StrainPhlAn with output from nf-core/taxprofiler x MetaPhlAn? Ask for help nf-core	0	45	August 12, 2025
Nextflow config to switching to GPU in nf-core/sarek pipeline Ask for help nextflow , nf-core , platform	3	314	August 8, 2025
Need help to setup the nf-core-rnaseq with google cloud Ask for help nextflow , nf-core	1	67	July 30, 2025
Help passing a tuple with paths as input for a process without splitting the files (Invalid method invocation 'call' with arguments: ...) Ask for help nextflow , nf-core	3	94	July 7, 2025
Are the nextflow codespaces not working? Ask for help nextflow , nf-core	11	183	July 7, 2025
StackOverflowError when chaining modules for nf-test Ask for help nextflow , nf-core , nf-test	3	73	June 24, 2025
Handling large numbers of processes in an HPC Ask for help nextflow , hpc , nf-core	2	110	June 19, 2025
Define task.ext.args per subworkflow Ask for help nextflow , nf-core	3	140	June 17, 2025
Nf-core/rnaseq v3.18.0 – Minimum‑55‑CPU rule, account suspensions & debug‑queue limits Ask for help nextflow , hpc , nf-core	3	111	May 23, 2025
Nf-core/scrnaseq help Ask for help nf-core	0	53	May 6, 2025
MultiQC timing out Ask for help multiqc , nf-core	6	128	April 30, 2025
CADD1.7.2 Docker image for nextflow Ask for help nf-core	0	50	April 23, 2025
How to wait for a subworkflow to complete before proceeding to another subworkflow? Ask for help nextflow , nf-core	3	131	April 23, 2025
Oncoanalyser: Ask for help nextflow , nf-core	4	100	April 16, 2025
Nextflow Podcast Ep. 50: Imaging pipelines and analysis, with Krešimir Beštak Events nextflow , nf-core , nextflow-podcast	0	61	April 3, 2025
Nextflow Podcast Ep. 49: Finding novel proteins at Seanome, with Olga Botvinnik Events nextflow , nf-core , nextflow-podcast	0	58	March 17, 2025
Nextflow CPU limit does not take effect Ask for help nextflow , hpc , nf-core	0	75	March 25, 2025
Nextflow stalls after version check Ask for help nextflow , nf-core	6	134	March 19, 2025
Nfcore/rnaseq pipeline never finishes Ask for help aws , nf-core , platform	2	122	March 13, 2025
Own variant calling nextflow pipeline - error with Variant Recalibrator. Argument resource is missing Ask for help nextflow , nf-core	2	46	March 11, 2025
Upload to aws s3 fails Ask for help aws , nf-core	0	45	March 8, 2025
About stage from symbolink path Ask for help nextflow , nf-core	0	47	March 7, 2025
Problem with upload nf-core output on minio server Ask for help aws , nf-core	0	63	February 28, 2025
Fixing error: FastQ file for reads 1 must be provided, cannot contain spaces and must have extension Ask for help nextflow , nf-core	5	263	February 27, 2025
Error when running RNASeq pipeline: ValueError: too many values to unpack (expected 3) Ask for help nf-core	0	64	February 8, 2025
Unable to Acquire Lock on Session - Already Moved /work Directory Ask for help nextflow , aws , nf-core , ampliseq , platform	0	121	February 3, 2025
Challenging Nextflow workflow - Need help please! Ask for help nextflow , nf-core	2	129	January 29, 2025
Samples mismatch issue while running nextflow module Ask for help nextflow , nf-core	1	72	January 27, 2025
Optional input path Ask for help nf-core	2	105	January 24, 2025