# \#seqera-containers

**URL:** https://community.seqera.io/tag/seqera-containers/79.md

[Latest](https://community.seqera.io/latest.md) · [Categories](https://community.seqera.io/categories.md) · [Tags](https://community.seqera.io/tags.md)

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## ['which' is missing in recent seqera containers](https://community.seqera.io/t/which-is-missing-in-recent-seqera-containers/2718)

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**Author:** [@Nico\_Trummer](https://community.seqera.io/u/Nico_Trummer)\
**Replies:** 2\
**Last updated:** [July 6, 2026, 1:01pm UTC](https://community.seqera.io/t/which-is-missing-in-recent-seqera-containers/2718 "2026-07-06T13:01:48Z")

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A simple r-base container currently does not work: This is because which is missing from the container. When comparing current build URLs with older ones, I saw that the base image changed. So I compared the base ima…

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## [Force rebuild of container](https://community.seqera.io/t/force-rebuild-of-container/2348)

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**Author:** [@Schmytzi](https://community.seqera.io/u/Schmytzi)\
**Replies:** 2\
**Last updated:** [June 9, 2026, 3:06pm UTC](https://community.seqera.io/t/force-rebuild-of-container/2348 "2026-06-09T15:06:34Z")

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Is there a way to force Seqera Containers to rebuild a container? I am trying to retrieve one for ont-modkit version 0.5.0. The Singularity container works fine but modkit identifies itself as version 0.4.5 instead of 0.…

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## [Single Seqera container failing to build](https://community.seqera.io/t/single-seqera-container-failing-to-build/2593)

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**Author:** [@dolgalevgv](https://community.seqera.io/u/dolgalevgv)\
**Replies:** 1\
**Last updated:** [June 3, 2026, 11:56pm UTC](https://community.seqera.io/t/single-seqera-container-failing-to-build/2593 "2026-06-03T23:56:10Z")

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I have an issue getting a container “pip::demuxalot-0.4.3” from Seqera containers. The build fails due to an error with compiling pysam. However, I have no issues building a container with just pysam, both from conda and…

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## [Quarto Jupyter engine error when running Seqera Docker container on an Apple silicon Mac](https://community.seqera.io/t/quarto-jupyter-engine-error-when-running-seqera-docker-container-on-an-apple-silicon-mac/2570)

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**Author:** [@mindlessgreen](https://community.seqera.io/u/mindlessgreen)\
**Replies:** 2\
**Last updated:** [February 17, 2026, 9:06pm UTC](https://community.seqera.io/t/quarto-jupyter-engine-error-when-running-seqera-docker-container-on-an-apple-silicon-mac/2570 "2026-02-17T21:06:24Z")

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Quarto Jupyter error when running Seqera Docker container on an Apple silicon Mac. Build specification: Container build report docker run --rm --platform=linux/amd64 community.wave.seqera.io/library/jupyter\_python\_quar…

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## [Specifying or using most recent bioconda build number for Seqera Containers](https://community.seqera.io/t/specifying-or-using-most-recent-bioconda-build-number-for-seqera-containers/2487)

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**Author:** [@JustinBellavance](https://community.seqera.io/u/JustinBellavance)\
**Replies:** 3\
**Last updated:** [December 14, 2025, 9:43am UTC](https://community.seqera.io/t/specifying-or-using-most-recent-bioconda-build-number-for-seqera-containers/2487 "2025-12-14T09:43:02Z")

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Hello, What would be the best way to specify (or take the most recent) bioconda build number for a bioconda recipe of a given version in seqera containers? For specifics, I recently updated the vcf2maf v1.6.22 bioconda…

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## [Failed to build a Docker ARM64 container for STAR (v2.7.9a)](https://community.seqera.io/t/failed-to-build-a-docker-arm64-container-for-star-v2-7-9a/2482)

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**Author:** [@lilin](https://community.seqera.io/u/lilin)\
**Replies:** 1\
**Last updated:** [December 3, 2025, 12:26pm UTC](https://community.seqera.io/t/failed-to-build-a-docker-arm64-container-for-star-v2-7-9a/2482 "2025-12-03T12:26:03Z")

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I failed to build a Docker ARM64 container for STAR (v2.7.9a) using Seqera Containers. I tried several different STAR versions, and only v2.7.11b built successfully. However, I specifically need version 2.7.9a. How can I…

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## [Singularity error in downloaded pipeline](https://community.seqera.io/t/singularity-error-in-downloaded-pipeline/2267)

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**Author:** [@itrujnara](https://community.seqera.io/u/itrujnara)\
**Replies:** 5\
**Last updated:** [September 27, 2025, 8:56am UTC](https://community.seqera.io/t/singularity-error-in-downloaded-pipeline/2267 "2025-09-27T08:56:29Z")

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I’m working on an nf-core pipeline, with the default CI set up. All release tests pass without issues, except one: pipeline download. The downloaded pipeline fails to run due to a Singularity issue. I get the following e…

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## [PyPI package not found](https://community.seqera.io/t/pypi-package-not-found/909)

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**Author:** [@Pascal](https://community.seqera.io/u/Pascal)\
**Replies:** 5\
**Last updated:** [August 20, 2024, 8:19am UTC](https://community.seqera.io/t/pypi-package-not-found/909 "2024-08-20T08:19:33Z")

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I am looking for a PyPI package for a container. I cant find it in the list: Which packages are excluded from the list? Thanks!!
