Hi there, I created a channel using: mutation_burden.out.mutation_burden_txt | collect(flat: false) | transpose()| buffer(skip: 1)| map { it[0] } | set { mutation_burden_collected_files} The file names are same. I’ve following collected file channel as: [mnt/data1/users/sanjeev/nextflow/meta_str…

Yes, touching the input file names in the next step, with stageAs, but it’s more complicated to do it like that. Is there a good reason for not renaming the output files in the previous step?

Input file name collision - There are multiple input files

Ask for help

complexgenome (S) April 16, 2024, 7:38pm 5

OK. Let me see what can be done.
It’s an output of an in-house script that I didn’t write.

Topic		Replies	Views
Duplicate file names Ask for help	3	82	November 7, 2024
How to join with multiple files in emits? Ask for help nextflow	14	303	March 19, 2024
Why nextflow overwrite my input? Ask for help nextflow	6	132	March 28, 2025
Five files in to a process, but only 1 comes out for the next? Ask for help nextflow	9	568	October 6, 2023
Best way to set an identifier for identical tasks run in parallel Ask for help	0	45	October 8, 2024

Input file name collision - There are multiple input files

Related topics