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Is it possible to use Nextflow with the `libmamba` conda solver?
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12
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858
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May 7, 2024
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Five files in to a process, but only 1 comes out for the next?
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9
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427
|
October 6, 2023
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Resume failing due to change in wave container path
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15
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184
|
August 15, 2024
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Collapse sample names in one table but not another
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9
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409
|
October 27, 2023
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How to wait until a process is complete?
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22
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473
|
April 23, 2024
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How to make errors from template scripts print and get added to .nextflow.log
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12
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480
|
February 13, 2024
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Timeout issue in nextflow process run on Azure batch
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18
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371
|
January 24, 2024
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AWS Megatests failing due to entrypoint overwrite not being applied to wave
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19
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344
|
February 17, 2024
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Call methods in groovy classes don't seem to work
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15
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378
|
April 10, 2024
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Default schema is not coupled to pipeline revision
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11
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410
|
October 30, 2023
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Resume workflow based on files in publishDir (or other external directory)
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9
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248
|
September 27, 2024
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Env: can't execute 'perl
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13
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332
|
January 25, 2024
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Handle NA and use branch operator - then send to process
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9
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316
|
February 19, 2024
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How to print files names after collect in a process to a file
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11
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274
|
May 20, 2024
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How to join with multiple files in emits?
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14
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230
|
March 19, 2024
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How to handle NA in file/path in map and process?
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11
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222
|
February 15, 2024
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Getting Unexpected input: '{' Error, but neither I or github copilot can find any syntax error
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12
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209
|
July 1, 2024
|
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X axis ordered by date?
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13
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167
|
March 28, 2024
|
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How to join branched channel with multi channel?
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10
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185
|
March 20, 2024
|
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Nextflow pipeline fails on AWS because it can't find executable in Docker container
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9
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189
|
August 30, 2024
|
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Recursion in workflow control
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|
10
|
128
|
April 16, 2024
|
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Too many error with VScode extension
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11
|
112
|
November 25, 2024
|
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Samtools coverage output not found by multiqc
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9
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108
|
June 28, 2024
|
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Singularity qiime2 container - qiime command not found
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9
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71
|
August 3, 2024
|
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Shared memory bug?
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10
|
46
|
August 14, 2024
|
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Increasing allocation for running on google cloud
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12
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42
|
August 20, 2024
|
|
Change report file folder
|
|
11
|
40
|
November 14, 2024
|
|
Run the latest release of a pipeline automatically
|
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12
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33
|
December 19, 2024
|
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Why do the structures seem to differ between the multiqc report and usage in a notebook?
|
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11
|
32
|
November 11, 2024
|
|
CannotInspectContainerError when launching jobs from localhost to run on AWS Batch
|
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9
|
29
|
February 7, 2025
|
|
Chaining Pipelines Together
|
|
3
|
444
|
November 8, 2023
|
|
Intergrate MultiQC more natively into the Nextflow backbone
|
|
2
|
390
|
November 5, 2023
|
|
How to process multiqc per sample instead of generating single report all togethe for the given list of sample in a workflow?
|
|
1
|
400
|
October 20, 2023
|
|
Adjusting an existing pipeline to use the new Wave containers
|
|
1
|
348
|
November 2, 2023
|
|
How can I dynamically name collectFile output based on input file
|
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5
|
304
|
April 6, 2024
|
|
Using Nextflow Language Server in editors that support LSP but are not VSCode
|
|
2
|
104
|
November 7, 2024
|
|
MultiQC: ModuleNotFoundError: No module named 'imp'
|
|
4
|
1362
|
October 21, 2023
|
|
Feature idea: Optimised memory allocation through preemptive adjustment to avoid anticipated failures
|
|
3
|
236
|
July 13, 2024
|
|
What is your Nextflow emacs setup?
|
|
3
|
234
|
November 8, 2024
|
|
Check whether a channel is queue or value
|
|
4
|
310
|
April 11, 2024
|
|
More advanced learning of nf-core and nextflow
|
|
4
|
98
|
July 18, 2024
|
|
Handling lots of IO (large files or lots of small files) on HPC systems
|
|
1
|
268
|
December 18, 2023
|
|
Adding sample id to resourceLabels in config file
|
|
6
|
137
|
May 29, 2024
|
|
Pushing my first 'mulled' container with wave: quay.io and AWS ECR ✅
|
|
7
|
388
|
October 21, 2023
|
|
Why docker/singulariy over conda?
|
|
3
|
302
|
April 29, 2024
|
|
LLM summaries for multiqc reports
|
|
7
|
118
|
February 6, 2025
|
|
With fusion based on (unlimited) object storage, how much of space is needed on the main OS itself?
|
|
2
|
308
|
November 14, 2023
|
|
GATK.GRCh38 vs GRCh38
|
|
4
|
239
|
July 19, 2024
|
|
Nextflow - bash: /usr/local/bin/nextflow: Permission denied
|
|
2
|
909
|
November 14, 2023
|
|
Docker: how to run a script within nextflow?
|
|
7
|
526
|
January 22, 2024
|