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Is it possible to use Nextflow with the `libmamba` conda solver?
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12
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816
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May 7, 2024
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Five files in to a process, but only 1 comes out for the next?
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9
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408
|
October 6, 2023
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Collapse sample names in one table but not another
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9
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401
|
October 27, 2023
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Resume failing due to change in wave container path
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15
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166
|
August 15, 2024
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How to wait until a process is complete?
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22
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389
|
April 23, 2024
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Timeout issue in nextflow process run on Azure batch
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18
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356
|
January 24, 2024
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How to make errors from template scripts print and get added to .nextflow.log
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12
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412
|
February 13, 2024
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AWS Megatests failing due to entrypoint overwrite not being applied to wave
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19
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332
|
February 17, 2024
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Default schema is not coupled to pipeline revision
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11
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405
|
October 30, 2023
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Resume workflow based on files in publishDir (or other external directory)
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9
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246
|
September 27, 2024
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Call methods in groovy classes don't seem to work
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15
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309
|
April 10, 2024
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Env: can't execute 'perl
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13
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311
|
January 25, 2024
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Handle NA and use branch operator - then send to process
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9
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310
|
February 19, 2024
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How to join with multiple files in emits?
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14
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224
|
March 19, 2024
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How to handle NA in file/path in map and process?
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11
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222
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February 15, 2024
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How to print files names after collect in a process to a file
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11
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218
|
May 20, 2024
|
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X axis ordered by date?
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13
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165
|
March 28, 2024
|
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How to join branched channel with multi channel?
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10
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174
|
March 20, 2024
|
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Getting Unexpected input: '{' Error, but neither I or github copilot can find any syntax error
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12
|
162
|
July 1, 2024
|
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Nextflow pipeline fails on AWS because it can't find executable in Docker container
|
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9
|
137
|
August 30, 2024
|
|
Recursion in workflow control
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|
10
|
125
|
April 16, 2024
|
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Too many error with VScode extension
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11
|
84
|
November 25, 2024
|
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Samtools coverage output not found by multiqc
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9
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86
|
June 28, 2024
|
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Singularity qiime2 container - qiime command not found
|
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9
|
45
|
August 3, 2024
|
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Increasing allocation for running on google cloud
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12
|
38
|
August 20, 2024
|
|
Shared memory bug?
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|
10
|
41
|
August 14, 2024
|
|
Change report file folder
|
|
11
|
38
|
November 14, 2024
|
|
Why do the structures seem to differ between the multiqc report and usage in a notebook?
|
|
11
|
30
|
November 11, 2024
|
|
Run the latest release of a pipeline automatically
|
|
11
|
13
|
December 12, 2024
|
|
Chaining Pipelines Together
|
|
3
|
439
|
November 8, 2023
|
|
Intergrate MultiQC more natively into the Nextflow backbone
|
|
2
|
386
|
November 5, 2023
|
|
How to process multiqc per sample instead of generating single report all togethe for the given list of sample in a workflow?
|
|
1
|
386
|
October 20, 2023
|
|
Adjusting an existing pipeline to use the new Wave containers
|
|
1
|
346
|
November 2, 2023
|
|
How can I dynamically name collectFile output based on input file
|
|
5
|
278
|
April 6, 2024
|
|
MultiQC: ModuleNotFoundError: No module named 'imp'
|
|
4
|
1267
|
October 21, 2023
|
|
Feature idea: Optimised memory allocation through preemptive adjustment to avoid anticipated failures
|
|
3
|
232
|
July 13, 2024
|
|
LLM summaries for multiqc reports
|
|
3
|
71
|
August 7, 2024
|
|
Using Nextflow Language Server in editors that support LSP but are not VSCode
|
|
2
|
71
|
November 7, 2024
|
|
Handling lots of IO (large files or lots of small files) on HPC systems
|
|
1
|
260
|
December 18, 2023
|
|
More advanced learning of nf-core and nextflow
|
|
4
|
86
|
July 18, 2024
|
|
Pushing my first 'mulled' container with wave: quay.io and AWS ECR ✅
|
|
7
|
381
|
October 21, 2023
|
|
Adding sample id to resourceLabels in config file
|
|
6
|
127
|
May 29, 2024
|
|
Check whether a channel is queue or value
|
|
4
|
256
|
April 11, 2024
|
|
With fusion based on (unlimited) object storage, how much of space is needed on the main OS itself?
|
|
2
|
302
|
November 14, 2023
|
|
Why docker/singulariy over conda?
|
|
3
|
242
|
April 29, 2024
|
|
Nextflow - bash: /usr/local/bin/nextflow: Permission denied
|
|
2
|
831
|
November 14, 2023
|
|
GATK.GRCh38 vs GRCh38
|
|
4
|
200
|
July 19, 2024
|
|
Is there a way to make custom/additional messages for resource exceeded errors?
|
|
3
|
382
|
January 3, 2024
|
|
Is it bad practice to try and 'pluck' files from an element in a channel that is a directory with channel manipulation?
|
|
1
|
294
|
October 27, 2023
|
|
Docker: how to run a script within nextflow?
|
|
7
|
442
|
January 22, 2024
|