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Is it possible to use Nextflow with the `libmamba` conda solver?
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12
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728
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May 7, 2024
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Collapse sample names in one table but not another
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9
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390
|
October 27, 2023
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Five files in to a process, but only 1 comes out for the next?
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9
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360
|
October 6, 2023
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Resume failing due to change in wave container path
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15
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137
|
August 15, 2024
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AWS Megatests failing due to entrypoint overwrite not being applied to wave
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19
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325
|
February 17, 2024
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Timeout issue in nextflow process run on Azure batch
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18
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328
|
January 24, 2024
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Default schema is not coupled to pipeline revision
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11
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397
|
October 30, 2023
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How to wait until a process is complete?
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22
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282
|
April 23, 2024
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How to make errors from template scripts print and get added to .nextflow.log
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12
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335
|
February 13, 2024
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Env: can't execute 'perl
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13
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284
|
January 25, 2024
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Handle NA and use branch operator - then send to process
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9
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301
|
February 19, 2024
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Call methods in groovy classes don't seem to work
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15
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231
|
April 10, 2024
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How to join with multiple files in emits?
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14
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209
|
March 19, 2024
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How to handle NA in file/path in map and process?
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11
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219
|
February 15, 2024
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X axis ordered by date?
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13
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164
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March 28, 2024
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How to join branched channel with multi channel?
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10
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168
|
March 20, 2024
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How to print files names after collect in a process to a file
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11
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150
|
May 20, 2024
|
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Recursion in workflow control
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10
|
118
|
April 16, 2024
|
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Getting Unexpected input: '{' Error, but neither I or github copilot can find any syntax error
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12
|
88
|
July 1, 2024
|
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Samtools coverage output not found by multiqc
|
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9
|
72
|
June 28, 2024
|
|
Nextflow pipeline fails on AWS because it can't find executable in Docker container
|
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9
|
62
|
August 30, 2024
|
|
Shared memory bug?
|
|
10
|
27
|
August 14, 2024
|
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Increasing allocation for running on google cloud
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12
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22
|
August 20, 2024
|
|
Singularity qiime2 container - qiime command not found
|
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9
|
23
|
August 3, 2024
|
|
Chaining Pipelines Together
|
|
3
|
429
|
November 8, 2023
|
|
Intergrate MultiQC more natively into the Nextflow backbone
|
|
2
|
383
|
November 5, 2023
|
|
How to process multiqc per sample instead of generating single report all togethe for the given list of sample in a workflow?
|
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1
|
373
|
October 20, 2023
|
|
Adjusting an existing pipeline to use the new Wave containers
|
|
1
|
340
|
November 2, 2023
|
|
MultiQC: ModuleNotFoundError: No module named 'imp'
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4
|
1145
|
October 21, 2023
|
|
Feature idea: Optimised memory allocation through preemptive adjustment to avoid anticipated failures
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3
|
225
|
July 13, 2024
|
|
Handling lots of IO (large files or lots of small files) on HPC systems
|
|
1
|
242
|
December 18, 2023
|
|
Pushing my first 'mulled' container with wave: quay.io and AWS ECR ✅
|
|
7
|
375
|
October 21, 2023
|
|
Adding sample id to resourceLabels in config file
|
|
6
|
121
|
May 29, 2024
|
|
How can I dynamically name collectFile output based on input file
|
|
5
|
228
|
April 6, 2024
|
|
With fusion based on (unlimited) object storage, how much of space is needed on the main OS itself?
|
|
2
|
296
|
November 14, 2023
|
|
More advanced learning of nf-core and nextflow
|
|
4
|
72
|
July 18, 2024
|
|
What is your Nextflow emacs setup?
|
|
2
|
164
|
June 14, 2024
|
|
LLM summaries for multiqc reports
|
|
3
|
38
|
August 7, 2024
|
|
Is it bad practice to try and 'pluck' files from an element in a channel that is a directory with channel manipulation?
|
|
1
|
290
|
October 27, 2023
|
|
Is there a way to make custom/additional messages for resource exceeded errors?
|
|
3
|
350
|
January 3, 2024
|
|
Deploying tower -agent on HPC without root access
|
|
6
|
246
|
December 5, 2023
|
|
Nextflow - bash: /usr/local/bin/nextflow: Permission denied
|
|
2
|
665
|
November 14, 2023
|
|
Branching and splitting
|
|
8
|
336
|
October 6, 2023
|
|
Wave and Singularity
|
|
8
|
328
|
October 24, 2023
|
|
Docker: how to run a script within nextflow?
|
|
7
|
332
|
January 22, 2024
|
|
Why docker/singulariy over conda?
|
|
3
|
147
|
April 29, 2024
|
|
Periods not allowed in pipeline names
|
|
2
|
285
|
August 14, 2024
|
|
Combining several MultiQC reports into one
|
|
4
|
382
|
February 15, 2024
|
|
Local container building with Singularity
|
|
8
|
275
|
July 26, 2024
|
|
Fastp: not enough samples showing
|
|
4
|
366
|
December 11, 2023
|