Is it possible to use Nextflow with the `libmamba` conda solver?
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12
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910
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May 7, 2024
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Resume failing due to change in wave container path
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15
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230
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August 15, 2024
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AWS Megatests failing due to entrypoint overwrite not being applied to wave
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19
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354
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February 17, 2024
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How to wait until a process is complete?
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22
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586
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April 23, 2024
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Five files in to a process, but only 1 comes out for the next?
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9
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464
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October 6, 2023
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Collapse sample names in one table but not another
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9
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422
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October 27, 2023
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How to make errors from template scripts print and get added to .nextflow.log
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12
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572
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February 13, 2024
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Call methods in groovy classes don't seem to work
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15
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503
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April 10, 2024
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Timeout issue in nextflow process run on Azure batch
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18
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396
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January 24, 2024
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Resume workflow based on files in publishDir (or other external directory)
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9
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264
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September 27, 2024
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Default schema is not coupled to pipeline revision
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11
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412
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October 30, 2023
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Env: can't execute 'perl
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13
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360
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January 25, 2024
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How to print files names after collect in a process to a file
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11
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337
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May 20, 2024
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Getting Unexpected input: '{' Error, but neither I or github copilot can find any syntax error
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12
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288
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July 1, 2024
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Handle NA and use branch operator - then send to process
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9
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322
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February 19, 2024
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X axis ordered by date?
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18
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218
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April 7, 2025
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Proper way to utilize >1 GPUs in a single machine?
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12
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262
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April 24, 2025
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How to join with multiple files in emits?
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14
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235
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March 19, 2024
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Nextflow pipeline fails on AWS because it can't find executable in Docker container
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9
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252
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August 30, 2024
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How to handle NA in file/path in map and process?
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11
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223
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February 15, 2024
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How to join branched channel with multi channel?
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10
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215
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March 20, 2024
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Too many error with VScode extension
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11
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162
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November 25, 2024
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Samtools coverage output not found by multiqc
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9
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175
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June 28, 2024
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Recursion in workflow control
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10
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129
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April 16, 2024
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Platform behaving differently for participants in same workspace
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11
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121
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March 5, 2025
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Singularity qiime2 container - qiime command not found
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9
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97
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August 3, 2024
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Increasing allocation for running on google cloud
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12
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64
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August 20, 2024
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Change report file folder
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11
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57
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November 14, 2024
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Why do the structures seem to differ between the multiqc report and usage in a notebook?
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11
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56
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November 11, 2024
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Run the latest release of a pipeline automatically
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12
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51
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December 19, 2024
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Shared memory bug?
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10
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55
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August 14, 2024
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CannotInspectContainerError when launching jobs from localhost to run on AWS Batch
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9
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43
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February 7, 2025
|
Chaining Pipelines Together
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3
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462
|
November 8, 2023
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Intergrate MultiQC more natively into the Nextflow backbone
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2
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393
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November 5, 2023
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How to process multiqc per sample instead of generating single report all togethe for the given list of sample in a workflow?
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1
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406
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October 20, 2023
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How can I dynamically name collectFile output based on input file
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5
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366
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April 6, 2024
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Adjusting an existing pipeline to use the new Wave containers
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1
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351
|
November 2, 2023
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More advanced learning of nf-core and nextflow
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4
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148
|
July 18, 2024
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MultiQC: ModuleNotFoundError: No module named 'imp'
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4
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1444
|
October 21, 2023
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Using Nextflow Language Server in editors that support LSP but are not VSCode
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7
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202
|
May 30, 2025
|
What is your Nextflow emacs setup?
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3
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285
|
November 8, 2024
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Feature idea: Optimised memory allocation through preemptive adjustment to avoid anticipated failures
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3
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248
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July 13, 2024
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Why docker/singulariy over conda?
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3
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423
|
April 29, 2024
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LLM summaries for multiqc reports
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8
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156
|
March 28, 2025
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Adding sample id to resourceLabels in config file
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6
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169
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May 29, 2024
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Check whether a channel is queue or value
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4
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353
|
April 11, 2024
|
GATK.GRCh38 vs GRCh38
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4
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328
|
July 19, 2024
|
Handling lots of IO (large files or lots of small files) on HPC systems
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1
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286
|
December 18, 2023
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Pushing my first 'mulled' container with wave: quay.io and AWS ECR ✅
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7
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415
|
October 21, 2023
|
Better practices using MultiQC in Quarto Notebooks for sets of images
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8
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120
|
March 28, 2025
|