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Is it possible to use Nextflow with the `libmamba` conda solver?
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12
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920
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May 7, 2024
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Resume failing due to change in wave container path
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15
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232
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August 15, 2024
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How to wait until a process is complete?
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22
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604
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April 23, 2024
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AWS Megatests failing due to entrypoint overwrite not being applied to wave
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19
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355
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February 17, 2024
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Five files in to a process, but only 1 comes out for the next?
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9
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472
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October 6, 2023
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Collapse sample names in one table but not another
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9
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429
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October 27, 2023
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How to make errors from template scripts print and get added to .nextflow.log
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12
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602
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February 13, 2024
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Call methods in groovy classes don't seem to work
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15
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529
|
April 10, 2024
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Timeout issue in nextflow process run on Azure batch
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18
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403
|
January 24, 2024
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Resume workflow based on files in publishDir (or other external directory)
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9
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266
|
September 27, 2024
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Default schema is not coupled to pipeline revision
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11
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413
|
October 30, 2023
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Env: can't execute 'perl
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13
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362
|
January 25, 2024
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How to print files names after collect in a process to a file
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11
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346
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May 20, 2024
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Getting Unexpected input: '{' Error, but neither I or github copilot can find any syntax error
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12
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302
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July 1, 2024
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Handle NA and use branch operator - then send to process
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9
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323
|
February 19, 2024
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Proper way to utilize >1 GPUs in a single machine?
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12
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271
|
April 24, 2025
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X axis ordered by date?
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18
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218
|
April 7, 2025
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How to join with multiple files in emits?
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14
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237
|
March 19, 2024
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Nextflow pipeline fails on AWS because it can't find executable in Docker container
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9
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256
|
August 30, 2024
|
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How to handle NA in file/path in map and process?
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11
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224
|
February 15, 2024
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How to join branched channel with multi channel?
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10
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219
|
March 20, 2024
|
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Too many error with VScode extension
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11
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178
|
November 25, 2024
|
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Samtools coverage output not found by multiqc
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9
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180
|
June 28, 2024
|
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Recursion in workflow control
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10
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129
|
April 16, 2024
|
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Platform behaving differently for participants in same workspace
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11
|
122
|
March 5, 2025
|
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Singularity qiime2 container - qiime command not found
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9
|
102
|
August 3, 2024
|
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Increasing allocation for running on google cloud
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12
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66
|
August 20, 2024
|
|
Shared memory bug?
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10
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62
|
August 14, 2024
|
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Change report file folder
|
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11
|
59
|
November 14, 2024
|
|
Why do the structures seem to differ between the multiqc report and usage in a notebook?
|
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11
|
56
|
November 11, 2024
|
|
Run the latest release of a pipeline automatically
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12
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53
|
December 19, 2024
|
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CannotInspectContainerError when launching jobs from localhost to run on AWS Batch
|
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9
|
45
|
February 7, 2025
|
|
Are the nextflow codespaces not working?
|
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10
|
10
|
July 7, 2025
|
|
Chaining Pipelines Together
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|
3
|
463
|
November 8, 2023
|
|
Intergrate MultiQC more natively into the Nextflow backbone
|
|
2
|
396
|
November 5, 2023
|
|
How to process multiqc per sample instead of generating single report all togethe for the given list of sample in a workflow?
|
|
1
|
408
|
October 20, 2023
|
|
How can I dynamically name collectFile output based on input file
|
|
5
|
383
|
April 6, 2024
|
|
Adjusting an existing pipeline to use the new Wave containers
|
|
1
|
352
|
November 2, 2023
|
|
Using Nextflow Language Server in editors that support LSP but are not VSCode
|
|
8
|
233
|
June 25, 2025
|
|
More advanced learning of nf-core and nextflow
|
|
4
|
158
|
July 18, 2024
|
|
What is your Nextflow emacs setup?
|
|
3
|
300
|
November 8, 2024
|
|
MultiQC: ModuleNotFoundError: No module named 'imp'
|
|
4
|
1465
|
October 21, 2023
|
|
Feature idea: Optimised memory allocation through preemptive adjustment to avoid anticipated failures
|
|
3
|
254
|
July 13, 2024
|
|
Why docker/singulariy over conda?
|
|
3
|
445
|
April 29, 2024
|
|
LLM summaries for multiqc reports
|
|
8
|
158
|
March 28, 2025
|
|
Check whether a channel is queue or value
|
|
4
|
366
|
April 11, 2024
|
|
Adding sample id to resourceLabels in config file
|
|
6
|
170
|
May 29, 2024
|
|
GATK.GRCh38 vs GRCh38
|
|
4
|
346
|
July 19, 2024
|
|
Handling lots of IO (large files or lots of small files) on HPC systems
|
|
1
|
293
|
December 18, 2023
|
|
Better practices using MultiQC in Quarto Notebooks for sets of images
|
|
8
|
125
|
March 28, 2025
|