I have a multiqc_config.yaml file as the following:
skip_generalstats: true
exclude_modules:
- prokka
custom_data:
Core_gene_SNP:
id: 'Core_gene_SNP'
section_name: 'Core gene SNP'
description: "Core gene SNP"
plot_type: 'table'
pconfig:
id: 'Core gene SNP'
namespace: 'Core gene SNP'
Accessory_gene_profiling:
id: 'Accessory_gene_profiling'
section_name: 'Accessory gene profiling'
description: "Accessory gene profiling"
plot_type: 'table'
pconfig:
id: 'Accessory gene profiling'
namespace: 'Accessory gene profiling'
Intergenic_region_core_SNP:
id: 'Intergenic_region_core_SNP'
section_name: 'Intergenic region core SNP'
description: "Intergenic region core SNP"
plot_type: 'table'
pconfig:
id: 'Intergenic region core SNP'
namespace: 'Intergenic region core SNP'
Intergenic_region_accessory_profiling:
id: 'Intergenic_region_accessory_profiling'
section_name: 'Intergenic region accessory profiling'
description: "Intergenic region accessory profiling"
plot_type: 'table'
pconfig:
id: 'Intergenic region accessory profiling'
namespace: 'Intergenic region accessory profiling'
custom_plot_config:
Intergenic_region_core_SNP_table:
col1_header: "Identifiers"
min: 1000
custom_table_header_config:
Accessory_gene_profiling_table:
accessory_gene_profiling-p_value:
format: "{:,.5f}"
Intergenic_region_core_SNP_table:
intergenic_region_core_snp-SNP_Position:
format: "{:,d}"
Intergenic_region_accessory_profiling_table:
intergenic_region_accessory_profiling-p_value:
format: "{:,.5f}"
sp:
Core_gene_SNP:
fn: 'core_SNP-sites.tsv'
Accessory_gene_profiling:
fn: 'filtered_accessories.tsv'
Intergenic_region_core_SNP:
fn: 'IGR_coreSNP.tsv'
Intergenic_region_accessory_profiling:
fn: 'IGR_accessories.tsv'
I followed the instruction on Customising reports | Seqera Docs to extract the table ID and header ID by clicking Configure Columns above the table I want to customise. However, both custom_plot_config and custom_table_header_config setting weren’t formatted as the setting. Did I miss something here?