I am trying to run rnaseq pipeline via tower: nextflow run 'https://github.com/nf-core/rnaseq' -name voluminous_joliot -params-file 'https://api.tower.nf/ephemeral/POavQ6D1KNKRnyJy4T0zXA.json' -with-tower -r 3.9 -profile singularity but it is failing wi…

Aha, so the same problem as was previously reported! [image] ewels: got as far as identifying an error with Windows line-endings within the pipeline source code How odd. Ok, well glad it’s working - thanks for letting us know :pray:

Env: can't execute 'perl

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animesh (fuzzyLife) January 23, 2024, 3:41pm 11

Running it via seqera/ tower web ui Seqera Cloud

Issue running bash with Jellyfish container

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Env: can't execute 'perl

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