Hello, Firstly I’m new to nextflow (and programmation). I learned to do a pipeline during a course where we worked on a cluster. Now I’m trying to put my scripts from a project into a nextflow pipeline, and I (try to) run it locally. The first process use Jellyfish, for which i found a container …

Issue running bash with Jellyfish container

mribeirodantas (Marcel Ribeiro-Dantas) December 31, 2024, 2:53am 2

Hello @Magiclexfr. Can you share a minimal reproducible example? The exact container image URI would be a good start.

It seems related to this. Both on Windows, issue with /usr/bin/env and so on. Can you please check?

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