This is not wave, but container related, and I didn’t know if there was a more appropriate channel, or where to post a bug report.
I want to make a make a container for interproscan:5.59_91.0
since the biocontainers one has can’t use ps
in the expected way.
When searching for interproscan:5.59_91.0
, seqera containers only brings up interproscan:5.59_STUB
, which then causes a subsequent build error as it can’t find a package by that name.
Container build details:
build id: 2cd7150970073846_1
name:
oras://community.wave.seqera.io/library/interproscan:5.59_STUB--2cd7150970073846
conda
:
channels:
- conda-forge
- bioconda
dependencies:
- bioconda::interproscan=5.59_STUB
singularity file:
BootStrap: docker
From: mambaorg/micromamba:1.5.8-lunar
%files
{{wave_context_dir}}/conda.yml /scratch/conda.yml
%post
micromamba install -y -n base -f /scratch/conda.yml
micromamba install -y -n base conda-forge::procps-ng
micromamba clean -a -y
%environment
export PATH="$MAMBA_ROOT_PREFIX/bin:$PATH"
build log:
INFO: Starting build...
Getting image source signatures
Copying blob sha256:6360b371721185fefbbad6763ab745900f1b2f7714570234473232dd575fc07f
Copying blob sha256:2ec3f7ad9b3ca7370ae62c6bdb36e3575239b5b0942163d36814c87efb3ff90d
Copying blob sha256:4f4fb700ef54461cfa02571ae0db9a0dc1e0cdb5577484a6d75e68dc38e8acc1
Copying blob sha256:03dae77ff45c4b21a524fe292d91a7704d870b528d3e03c3624a4d48e7733d65
Copying blob sha256:8c61d418774c0c5a7be0036dd042add78077c4195d904abdba1080bad2539797
Copying blob sha256:7716ca30060043d1c1ba35c09e8eb2fda19788fc0d5ec491d85e866306207cc9
Copying blob sha256:aab7f787139dee8557ebf54563c3e9e57c28d98e41e98f997c8af42c15b78b09
Copying blob sha256:4f4fb700ef54461cfa02571ae0db9a0dc1e0cdb5577484a6d75e68dc38e8acc1
Copying blob sha256:837d55536720ebdfd52a582cc6333019e0cfe430ef7c24fb17333f8d0fb9e7ec
Copying blob sha256:897362c12ca72fae6ca70474a9f2e9ced3a57c82f11f13033d4c3c73aae320a8
Copying blob sha256:3893cbe24e910b5f4aa84fde0aedaf93c0cd7fbd66a423c39cb1077d420753e8
Copying blob sha256:d1b61e94977bd32162b9537fa73b2bde0c0e866044bf3b973c7a20501102e11d
Copying config sha256:77165e42cdbb8e7d7ceaba550c333c88eb20b2463d45247197390b43b2588c48
Writing manifest to image destination
Storing signatures
2024/06/05 11:11:46 info unpack layer: sha256:6360b371721185fefbbad6763ab745900f1b2f7714570234473232dd575fc07f
2024/06/05 11:11:48 info unpack layer: sha256:2ec3f7ad9b3ca7370ae62c6bdb36e3575239b5b0942163d36814c87efb3ff90d
2024/06/05 11:11:48 info unpack layer: sha256:7716ca30060043d1c1ba35c09e8eb2fda19788fc0d5ec491d85e866306207cc9
2024/06/05 11:11:48 info unpack layer: sha256:4f4fb700ef54461cfa02571ae0db9a0dc1e0cdb5577484a6d75e68dc38e8acc1
2024/06/05 11:11:48 info unpack layer: sha256:8c61d418774c0c5a7be0036dd042add78077c4195d904abdba1080bad2539797
2024/06/05 11:11:48 info unpack layer: sha256:03dae77ff45c4b21a524fe292d91a7704d870b528d3e03c3624a4d48e7733d65
2024/06/05 11:11:48 info unpack layer: sha256:aab7f787139dee8557ebf54563c3e9e57c28d98e41e98f997c8af42c15b78b09
2024/06/05 11:11:48 info unpack layer: sha256:4f4fb700ef54461cfa02571ae0db9a0dc1e0cdb5577484a6d75e68dc38e8acc1
2024/06/05 11:11:48 info unpack layer: sha256:837d55536720ebdfd52a582cc6333019e0cfe430ef7c24fb17333f8d0fb9e7ec
2024/06/05 11:11:48 info unpack layer: sha256:897362c12ca72fae6ca70474a9f2e9ced3a57c82f11f13033d4c3c73aae320a8
2024/06/05 11:11:48 info unpack layer: sha256:3893cbe24e910b5f4aa84fde0aedaf93c0cd7fbd66a423c39cb1077d420753e8
2024/06/05 11:11:48 info unpack layer: sha256:d1b61e94977bd32162b9537fa73b2bde0c0e866044bf3b973c7a20501102e11d
INFO: Copying /efs/wave/build/2cd7150970073846_1/context/conda.yml to /scratch/conda.yml
INFO: Running post scriptlet
+ micromamba install -y -n base -f /scratch/conda.yml
error libmamba Could not solve for environment specs
The following package could not be installed
└─ interproscan 5.59_STUB* does not exist (perhaps a typo or a missing channel).
critical libmamba Could not solve for environment specs
FATAL: While performing build: while running engine: exit status 1