I have FASTQC reports from many paid end files. I also have the alignments done with bowtie2. Of course there are only half as many bowtie2 reports as there are FASTQC report. How should I name the filenames so that everything gets properly consolidated and “stays together”, including in the “General Statistics” tab?
Hi @Anton_Kratz,
You’re looking for the new “Sample Grouping” feature:
This was built specifically for the use case you describe.
Hope that helps!
Phil
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