Using containers - /bin/bash: .command.sh: No such file or directory

Training
1

When following the Containers portion of Hello Nextflow, I run into this error and cannot seem to find a solution:

[47/585adf] sayHello (2)       | 3 of 3, cached: 3 ✔
[da/a3315d] convertToUpper (2) | 3 of 3, cached: 3 ✔
[2a/a0e2f5] collectGreetings   | 1 of 1, cached: 1 ✔
[93/8f2e37] cowpy              | 0 of 1 ✘
There were 3 greetings in this batch
ERROR ~ Error executing process > 'cowpy'

Caused by:
  Process `cowpy` terminated with an error exit status (1)


Command executed:

  cat COLLECTED-test-batch-output.txt | cowpy -c "turkey" > cowpy-COLLECTED-test-batch-output.txt

Command exit status:
  1

Command output:
  (empty)

Command error:
  /bin/bash: .command.sh: No such file or directory

Work dir:
  /workspaces/training/hello-nextflow/work/93/8f2e370dc9610d506c8958f958ed24

Container:
  community.wave.seqera.io/library/cowpy:1.1.5--3db457ae1977a273

Tip: view the complete command output by changing to the process work dir and entering the command `cat .command.out`

 -- Check '.nextflow.log' file for details
2

Hi @dbojanova ! Welcome to the community forum :slight_smile:

Could you please give more detail about how you’re going through the training? You’re in GitHub Codespaces? Local dev container?

When you run the hello-containers-2.nf script in ./solutions/5-hello-containers/, what happens?