Vscode extension "unexpected input: try"

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1

I’m getting the error “unexpected input: ‘try’” for a line like this in my pipeline. This is not the identical set up, but my pipeline is based off this one. I couldn’t find any discussion of try-catch blocks being disallowed with the new vscode extension here.

Does anyone know what’s causing this error or how update the code to satisfy the linter?

2

They’re deprecated. See Remove try-catch blocks around institutional configs · Issue #3132 · nf-core/tools · GitHub for instance. It seems @bentsherman missed documenting this one too in the VS Code integration — Nextflow documentation

3

I think the solution is what’s suggested for the dynamic include: VS Code integration — Nextflow documentation

includeConfig ({
    def hostname = // ...
    if (hostname == 'small')
        return 'small.config'
    else if (hostname == 'large')
        return 'large.config'
    else
        return '/dev/null'
}())
4

thanks!

5

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