|
About the Tips & Tricks category
|
|
0
|
267
|
October 2, 2023
|
|
Cleaning output directory when workflow fails
|
|
0
|
418
|
January 3, 2024
|
|
Get first N elements from a channel
|
|
0
|
359
|
October 2, 2023
|
|
Nf-test: Get the relative paths of all files in a pipeline output folder
|
|
0
|
370
|
March 28, 2024
|
|
Enabling resume for specific processes
|
|
4
|
511
|
September 15, 2025
|
|
Running a Nextflow pipeline from a Git repository: Setting defaults
|
|
3
|
840
|
October 1, 2024
|
|
Skipping processes in an nf-core pipeline
|
|
0
|
598
|
January 18, 2024
|
|
Remove channel entries using a keys/entries from another channel
|
|
0
|
220
|
March 14, 2024
|
|
Collecting channel entries consisting of tuples and sending it to a process
|
|
0
|
318
|
March 21, 2024
|
|
Nf-test: Capture all process/workflow outputs without capturing md5sums of files in snapshots
|
|
0
|
302
|
March 28, 2024
|
|
Using a launch script to run nextflow
|
|
0
|
125
|
December 12, 2024
|
|
Native Terminal Notifications on Pipeline completion
|
|
2
|
163
|
November 6, 2024
|
|
Connecting / Chaining existing Nextflow workflows in a meta workflow
|
|
1
|
256
|
July 25, 2024
|
|
Getting the file baseName depending on the file extension
|
|
2
|
1117
|
April 3, 2024
|
|
Turn on printing of all executed bash commands and disable deleting temp folder in work folder
|
|
2
|
260
|
March 6, 2024
|
|
Checking the error output of ignored tasks
|
|
2
|
426
|
February 10, 2024
|
|
Group tuples based on two meta map keys, and sort based on another one
|
|
0
|
483
|
October 2, 2023
|
|
Flexible publishDir in Nextflow Using the Same Process
|
|
0
|
50
|
May 24, 2026
|
|
Handling SLURM Node Evictions in Nextflow: A Simple Retry Strategy
|
|
1
|
61
|
May 1, 2026
|
|
Writing multi-line strings from input objects to file in Bash scripts
|
|
0
|
184
|
June 12, 2025
|
|
Source another R script in the `bin/` directory
|
|
2
|
387
|
April 23, 2025
|
|
How to skip specific/failed samples on next `-resume`
|
|
2
|
216
|
April 16, 2025
|
|
Composing strings based on multiple conditions
|
|
0
|
113
|
February 27, 2025
|
|
Divide-and-conquer strategy to call problematic regions
|
|
0
|
75
|
February 11, 2025
|
|
Prevent nextflow from running a process if the output file exists
|
|
1
|
292
|
February 8, 2025
|
|
Handling Unordered CSV
|
|
0
|
65
|
January 26, 2025
|
|
How to set docker sudo in Nextflow for your containers
|
|
1
|
194
|
October 11, 2024
|
|
Minimally Reproducible Conda Set Up For Nextflow
|
|
1
|
135
|
October 11, 2024
|
|
Adding resourceLabels per project and sampe from a config file
|
|
0
|
137
|
May 30, 2024
|
|
Escaping strings to prevent unexpected interpolation or code injection
|
|
2
|
234
|
March 26, 2024
|