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About the Tips & Tricks category
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0
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265
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October 2, 2023
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Cleaning output directory when workflow fails
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0
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414
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January 3, 2024
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Get first N elements from a channel
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0
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355
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October 2, 2023
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Nf-test: Get the relative paths of all files in a pipeline output folder
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0
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366
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March 28, 2024
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Enabling resume for specific processes
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4
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491
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September 15, 2025
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Running a Nextflow pipeline from a Git repository: Setting defaults
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3
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823
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October 1, 2024
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Skipping processes in an nf-core pipeline
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0
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571
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January 18, 2024
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Remove channel entries using a keys/entries from another channel
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0
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215
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March 14, 2024
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Collecting channel entries consisting of tuples and sending it to a process
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0
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312
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March 21, 2024
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Nf-test: Capture all process/workflow outputs without capturing md5sums of files in snapshots
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0
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288
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March 28, 2024
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Using a launch script to run nextflow
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0
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118
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December 12, 2024
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Native Terminal Notifications on Pipeline completion
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2
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157
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November 6, 2024
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Connecting / Chaining existing Nextflow workflows in a meta workflow
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1
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251
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July 25, 2024
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Getting the file baseName depending on the file extension
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2
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1087
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April 3, 2024
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Turn on printing of all executed bash commands and disable deleting temp folder in work folder
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2
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249
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March 6, 2024
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Checking the error output of ignored tasks
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2
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419
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February 10, 2024
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Group tuples based on two meta map keys, and sort based on another one
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0
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476
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October 2, 2023
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Flexible publishDir in Nextflow Using the Same Process
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0
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43
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May 24, 2026
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Handling SLURM Node Evictions in Nextflow: A Simple Retry Strategy
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1
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49
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May 1, 2026
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Writing multi-line strings from input objects to file in Bash scripts
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0
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167
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June 12, 2025
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Source another R script in the `bin/` directory
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2
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378
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April 23, 2025
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How to skip specific/failed samples on next `-resume`
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2
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196
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April 16, 2025
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Composing strings based on multiple conditions
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0
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109
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February 27, 2025
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Divide-and-conquer strategy to call problematic regions
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0
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71
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February 11, 2025
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Prevent nextflow from running a process if the output file exists
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1
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282
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February 8, 2025
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Handling Unordered CSV
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0
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60
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January 26, 2025
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How to set docker sudo in Nextflow for your containers
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1
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184
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October 11, 2024
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Minimally Reproducible Conda Set Up For Nextflow
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1
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124
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October 11, 2024
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Adding resourceLabels per project and sampe from a config file
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0
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135
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May 30, 2024
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Escaping strings to prevent unexpected interpolation or code injection
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2
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225
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March 26, 2024
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