Topics tagged aws

Topic	Replies	Views	Activity
RNAseq pipeline not terminating Ask for help aws , nextflow	3	17	November 20, 2024
Read & Write to 2 different S3 buckets Ask for help aws , nextflow	2	91	November 17, 2024
Using 2 AWS Batch Compute Environments within a single pipeline Ask for help nextflow , aws , platform	2	29	November 15, 2024
Cannot add credentials for ECR container registry Ask for help aws , wave , platform	3	22	November 15, 2024
Reading an input file from a public-only S3 bucket Ask for help aws , nextflow	1	28	November 15, 2024
AccessDeniedException with docker + slurm on AWS Ask for help aws , slurm , nextflow	1	11	November 15, 2024
Seqera cloud pipeline gets stuck in runnable Ask for help ampliseq , aws , nextflow	1	18	November 15, 2024
Frequently failing runs using AWS Batch Spot Ask for help platform , aws	1	12	November 15, 2024
Aws command not found error Ask for help aws	1	13	October 21, 2024
Non-aws S3 bucket won't be picked up by nextflow Ask for help nf-core , aws , nextflow	2	14	October 21, 2024
Awscli can't find libz share object file when running nextflow workflow on AWS Batch Ask for help nf-core , aws	2	13	October 12, 2024
AWS Batch job stuck at runnable when using a compute environment that would enable use of a GPU (A10) -> which next step to take? Ask for help aws , config , gpu	2	20	October 7, 2024
Nextflow can't file file from combined Channel when running on running awsbatch executor Ask for help aws , nextflow	2	15	September 25, 2024
Enabling `-resume` and `-log` on AWS Batch Ask for help aws	1	10	September 18, 2024
Help troubleshooting rm: can't remove '/tmp/nfsx/nxf.XXXXhq43dI/*': Read-only file system Ask for help aws , nextflow	1	16	September 16, 2024
Forwarding AWS credentials to local container? Ask for help nextflow , aws	3	21	September 11, 2024
Adding non-aws S3 bucket in seqera platform Ask for help platform , aws	1	174	September 9, 2024
Nextflow pipeline fails on AWS because it can't find executable in Docker container Ask for help aws , nextflow	9	115	August 30, 2024
Unable to Create AWS Batch Compute Environment Ask for help aws , platform	0	180	March 25, 2024
Aws s3 cp with Fusion terminating multipart download early with v24.04.03 Ask for help fusion , aws , tower , nextflow	0	39	July 29, 2024
AWS SSM Parameters not picked up Ask for help aws , platform	1	8	July 23, 2024
Renaming large files causing possible Fusion error Ask for help nextflow , fusion , aws	4	81	July 12, 2024
Forge queue naming and pipeline failover Ask for help platform , aws	7	21	July 11, 2024
How do Nextflow and AWS Batch are working together on an architectural level? Ask for help aws	1	98	June 13, 2024
Request for seqera platform/fusion support for the memverge float executor Ask for help tower , fusion , aws	1	58	June 2, 2024
Correct use of containerOptions with multiple options Ask for help aws , nextflow	5	124	May 30, 2024
Adding resourceLabels per project and sampe from a config file Tips & Tricks aws , nextflow	0	93	May 30, 2024
Adding sample id to resourceLabels in config file Ask for help aws , nextflow	6	126	May 29, 2024
Using fusion with AWS batch and s3 buckets across multiple accounts Ask for help aws , nextflow	2	154	May 7, 2024
Wave container builds failing due to private ECR path modifications Ask for help nextflow , aws	1	109	April 30, 2024