Topics tagged aws

Topic	Replies	Views	Activity
Help with Optimizing Nextflow Pipeline for Large Datasets Ask for help nextflow , aws	0	1	February 21, 2025
aws.batch.maxParallelTransfers Documentation Question Ask for help aws , nextflow	3	25	February 8, 2025
CannotInspectContainerError when launching jobs from localhost to run on AWS Batch Ask for help aws , nextflow	9	29	February 7, 2025
How does aws.batch.maxSpotAttempts work? Ask for help aws , nextflow	1	10	February 4, 2025
AWS Batch: Spot Instance - How does Nextflow log an interruption? Ask for help aws , nextflow	4	43	February 4, 2025
Unable to Acquire Lock on Session - Already Moved /work Directory Ask for help ampliseq , nf-core , platform , aws , nextflow	0	13	February 3, 2025
AWS Batch - migration to graviton - implications on wave performance Ask for help aws , nextflow , wave	3	27	December 12, 2024
Applying tags to output files in subdirectories on S3 Ask for help nextflow , aws	0	5	December 10, 2024
Pipeline completes on AWS batch but one process didn't complete and no errors Ask for help aws , nextflow	0	15	November 27, 2024
Seqera cloud pipeline gets stuck in runnable Ask for help ampliseq , aws , nextflow	2	45	November 27, 2024
RNAseq pipeline not terminating Ask for help aws , nextflow	4	43	November 20, 2024
Read & Write to 2 different S3 buckets Ask for help aws , nextflow	2	103	November 17, 2024
Using 2 AWS Batch Compute Environments within a single pipeline Ask for help nextflow , aws , platform	3	45	November 22, 2024
Cannot add credentials for ECR container registry Ask for help aws , wave , platform	3	31	November 15, 2024
Reading an input file from a public-only S3 bucket Ask for help aws , nextflow	1	39	November 15, 2024
AccessDeniedException with docker + slurm on AWS Ask for help aws , slurm , nextflow	1	20	November 15, 2024
Frequently failing runs using AWS Batch Spot Ask for help platform , aws	1	28	November 15, 2024
Aws command not found error Ask for help aws	1	33	October 21, 2024
Non-aws S3 bucket won't be picked up by nextflow Ask for help nf-core , aws , nextflow	2	21	October 21, 2024
Awscli can't find libz share object file when running nextflow workflow on AWS Batch Ask for help nf-core , aws	2	22	October 12, 2024
AWS Batch job stuck at runnable when using a compute environment that would enable use of a GPU (A10) -> which next step to take? Ask for help aws , config , gpu	2	92	October 7, 2024
Nextflow can't file file from combined Channel when running on running awsbatch executor Ask for help aws , nextflow	2	20	September 25, 2024
Enabling `-resume` and `-log` on AWS Batch Ask for help aws	1	30	September 18, 2024
Help troubleshooting rm: can't remove '/tmp/nfsx/nxf.XXXXhq43dI/*': Read-only file system Ask for help aws , nextflow	1	18	September 16, 2024
Forwarding AWS credentials to local container? Ask for help nextflow , aws	3	22	September 11, 2024
Adding non-aws S3 bucket in seqera platform Ask for help platform , aws	1	174	September 9, 2024
Nextflow pipeline fails on AWS because it can't find executable in Docker container Ask for help aws , nextflow	9	190	August 30, 2024
Unable to Create AWS Batch Compute Environment Ask for help aws , platform	0	191	March 25, 2024
Aws s3 cp with Fusion terminating multipart download early with v24.04.03 Ask for help fusion , aws , tower , nextflow	0	49	July 29, 2024
AWS SSM Parameters not picked up Ask for help aws , platform	1	8	July 23, 2024