Topics tagged nextflow

Topic	Replies	Views	Activity
Dynamic tagging of processes Ask for help nextflow	2	15	June 20, 2025
Handling large numbers of processes in an HPC Ask for help nextflow , hpc , nf-core	1	22	June 19, 2025
Cutandrun error samtools sort: No such file or directory Ask for help nextflow	3	8	June 18, 2025
DRY Principle in Nextflow: Reusing Output Path Definitions in `output:` and `script:` sections Ask for help nextflow	2	15	June 18, 2025
Multiple publishDir for one process in nextflow config Ask for help config , nextflow	1	8	June 17, 2025
Define task.ext.args per subworkflow Ask for help nextflow , nf-core	2	16	June 17, 2025
Writing multi-line strings from input objects to file in Bash scripts Tips & Tricks nextflow	0	12	June 12, 2025
Failed to Publish File WARNs for Pipeline That Produces Many Files Ask for help nextflow	0	19	June 10, 2025
Jobs marked as failed by nextflow but slurm exit code 0 Ask for help nextflow , hpc	0	17	June 9, 2025
.bai files not found in follow-up process Ask for help nextflow	2	24	June 4, 2025
Output width Ask for help nextflow	3	26	June 3, 2025
Nextflow Podcast Ep. 52: Australian BioCommons Events nextflow , nextflow-podcast , platform	0	24	June 3, 2025
Nextflow Podcast Ep. 51: Nextflow Strict Syntax Events vscode , nextflow , nextflow-podcast	0	58	April 11, 2025
Understanding relative paths Ask for help nextflow	4	23	May 28, 2025
Cleanup and publishing performance Ask for help nextflow , hpc	4	36	May 27, 2025
Nf-core/rnaseq v3.18.0 – Minimum‑55‑CPU rule, account suspensions & debug‑queue limits Ask for help nf-core , hpc , nextflow	3	35	May 23, 2025
Make job dependent on publishing Ask for help nextflow	4	21	May 23, 2025
Nextflow pipeline not working any more with Google Batch Ask for help google-cloud , nextflow	3	43	May 22, 2025
Java heap space error Ask for help nextflow	5	46	May 21, 2025
Custom module linked via symlink not found during import Ask for help nextflow	1	13	May 21, 2025
Retry Input File Staging on Network Failure Ask for help nextflow	0	11	May 19, 2025
Triggering nextflow pipeline using API call Ask for help tower , aws , nextflow	3	26	May 12, 2025
Mamba fails to create environment because the `--yes` flag is not supplied Ask for help nextflow	0	20	May 9, 2025
The second process is not being executed frequently enough compare to the first process Ask for help nextflow	3	17	May 8, 2025
Can I use `pubishDir` as an input for another process? Ask for help nextflow	3	66	May 6, 2025
Python script used by bash script not found Ask for help nextflow	4	20	May 13, 2025
Processing Sensitive Information in Nextflow Ask for help nextflow	0	28	April 30, 2025
Proper way to utilize >1 GPUs in a single machine? Ask for help nextflow	12	264	April 24, 2025
Issues with fusion Ask for help nextflow , fusion , aws	0	25	April 24, 2025
Nextflow cli as a library? Ask for help nextflow	6	54	April 23, 2025