Topics tagged nextflow

Topic	Replies	Views	Activity
Nextflow Training and nf-core Hackathon Barcelona 2025 Events nextflow , nf-core :rocket: Join us in Barcelona on Oct 28-29! Registration for the Nextflow Training and nf-core Hackathon are now open! Get ready for two days of hands-on learning, hacking, and meaningful collaboration. …	1	63	July 17, 2025
Nextflow config to switching to GPU in nf-core/sarek pipeline Ask for help nextflow , nf-core , platform	3	21	August 8, 2025
Very High virtual memory(vmem) usage for certain processes in nextflow workflow? Ask for help nextflow	1	3	August 8, 2025
How to deal with optional inputs in a workflow Ask for help nextflow	1	10	August 7, 2025
workDir in sarek doesn't get set and get error Process input file target path must be relative Ask for help nextflow , google-cloud	0	14	August 3, 2025
Need help to setup the nf-core-rnaseq with google cloud Ask for help nextflow , nf-core	1	10	July 30, 2025
Peak_rss calculation Ask for help nextflow	2	33	July 28, 2025
Process failing to retry on timeout Ask for help nextflow , config	5	29	July 23, 2025
OOMs using Nextflow that don't happen when submitting jobs manually Ask for help nextflow , slurm	3	35	July 22, 2025
Output width Ask for help nextflow	6	58	July 14, 2025
Proper way to utilize >1 GPUs in a single machine? Ask for help nextflow	13	321	July 17, 2025
Possible Bug with 'reduce' Operator in Nextflow – Minimal Reproducible Example Provided Ask for help nextflow	1	30	July 16, 2025
Seqera cloud pipeline gets stuck in runnable Ask for help nextflow , aws , ampliseq	3	101	July 12, 2025
Mamba fails to create environment because the `--yes` flag is not supplied Ask for help nextflow	3	56	July 10, 2025
Help passing a tuple with paths as input for a process without splitting the files (Invalid method invocation 'call' with arguments: ...) Ask for help nextflow , nf-core	3	36	July 7, 2025
Are the nextflow codespaces not working? Ask for help nextflow , nf-core	11	47	July 7, 2025
Why would native processes ( exec ) be resubmitted even though the hash inputs don't change? Ask for help nextflow	2	26	July 4, 2025
Channel Structure for Process with Grouped Files and Nested Lists Ask for help nextflow	1	21	June 30, 2025
StackOverflowError when chaining modules for nf-test Ask for help nextflow , nf-core , nf-test	3	27	June 24, 2025
Cutandrun error samtools sort: No such file or directory Ask for help nextflow	4	20	June 23, 2025
Dynamic tagging of processes Ask for help nextflow	4	24	June 23, 2025
Handling large numbers of processes in an HPC Ask for help nextflow , hpc , nf-core	2	48	June 19, 2025
DRY Principle in Nextflow: Reusing Output Path Definitions in `output:` and `script:` sections Ask for help nextflow	3	37	June 18, 2025
Multiple publishDir for one process in nextflow config Ask for help nextflow , config	2	32	June 17, 2025
Define task.ext.args per subworkflow Ask for help nextflow , nf-core	3	30	June 17, 2025
Writing multi-line strings from input objects to file in Bash scripts Tips & Tricks nextflow	0	18	June 12, 2025
Failed to Publish File WARNs for Pipeline That Produces Many Files Ask for help nextflow	0	28	June 10, 2025
Jobs marked as failed by nextflow but slurm exit code 0 Ask for help nextflow , hpc	0	36	June 9, 2025
.bai files not found in follow-up process Ask for help nextflow	2	32	June 4, 2025
Nextflow Podcast Ep. 52: Australian BioCommons Events nextflow , platform , nextflow-podcast	0	30	June 3, 2025

Nextflow Training and nf-core Hackathon Barcelona 2025

nextflow , nf-core

:rocket: Join us in Barcelona on Oct 28-29! Registration for the Nextflow Training and nf-core Hackathon are now open! Get ready for two days of hands-on learning, hacking, and meaningful collaboration. …