Hey! I want to re-use the gatk/baserecalibrator module for the sentieon qualcal tools. The resulting output seems mostly similar except that the headers are different. They are set here MultiQC/multiqc/modules/gatk/base_recalibrator.py at 9fae75037179f4bece0f1fa96189337e80e8ee2d · MultiQC/MultiQC · GitHub. Is there a way to overwrite them?
I have tried with
sp:
gatk/base_recalibrator:
contents: "#:SENTIEON_QCAL_TABLE:Arguments:Recalibration"
num_lines: 3
but that just finds one of them.
Thank you!