When running
nextflow run nf-core/mag -profile docker,test -r 3.4.0
on my M1 Mac, I’m finding MultiQC is just hanging after it gets to
.command.log
:
WARNING: The requested image's platform (linux/amd64) does not match the detected host platform (linux/arm64/v8) and no specific platform was requested
/// MultiQC 🔍 v1.27
config | Loading config settings from: multiqc_config.yml
version_check | MultiQC Version v1.28 now available!
file_search | Search path: /Users/mahpa906/Documents/Projects/nf-cascade/work/ed/a9417924b3891ba4edf6dcecd130ba
file_search | Only using modules: fastqc, fastp, adapterremoval, trimmomatic, porechop, filtlong, fastqc, bowtie2, bowtie2, kraken, kraken, quast, bowtie2, custom_content, quast, busco, prokka
fastqc | Found 6 reports
fastp | Found 3 reports
fastqc | Found 6 reports
bowtie2 | Found 3 reports
kraken | Found 2 reports
quast | Found 4 reports
bowtie2 | Found 8 reports
custom_content | nf-core-mag-methods-description: Found 1 sample (html)
custom_content | nf-core-mag-summary: Found 1 sample (html)
quast | Found 19 reports
busco | Found 19 reports
prokka | Found 19 logs
file_search | Only using modules: fastqc, fastp, fastqc, bowtie2, kraken, quast, bowtie2, quast, busco, prokka, nf-core-mag-methods-description, nf-core-mag-summary
write_results | Rendering plots. Export plots to formats png, svg, pdf is requested, so it might take a while. To disable plot export, set `export_plots: false` in config, or remove the `--export-plots` command line flag
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MultiQC v1.28 is also timing out.
Asking on the nf-core #mag forum, i simply got it was not supposed to happen.