|
Looking for a way to trigger a Nextflow cleanup process (deleting input files) only after the entire workflow completes successfully—any ideas or best practices to handle this efficiently?
|
|
5
|
49
|
January 13, 2025
|
|
Nf-core create seems that utf8 is not supported
|
|
1
|
22
|
December 16, 2024
|
|
Resolving variable number of s3 paths in a list of lists fed to a process
|
|
4
|
26
|
December 2, 2024
|
|
Field 'computeEnvId' is not writable: unset or use previous value: nf-core ampliseq
|
|
1
|
12
|
November 15, 2024
|
|
Wave invalid response: [400] {"Container image does not exist or access is not authorized"}
|
|
7
|
51
|
November 1, 2024
|
|
Non-aws S3 bucket won't be picked up by nextflow
|
|
2
|
19
|
October 21, 2024
|
|
On methylseq pipeline, how to specify a different library length for bismark?
|
|
2
|
9
|
October 16, 2024
|
|
Command error: `touch: .command.trace: Permission denied` when running on docker
|
|
4
|
268
|
October 12, 2024
|
|
Awscli can't find libz share object file when running nextflow workflow on AWS Batch
|
|
2
|
18
|
October 12, 2024
|
|
Using a program to pre-process the samplesheet
|
|
4
|
43
|
October 9, 2024
|
|
RNA-Seq pipeline fails early
|
|
3
|
50
|
October 8, 2024
|
|
I am trying to run ampliseq pipline on nf tower
|
|
1
|
12
|
October 7, 2024
|
|
Pipeline getting frozen (nf-core)
|
|
3
|
124
|
September 2, 2024
|
|
Google Batch - Stub Run not working
|
|
0
|
137
|
February 29, 2024
|
|
Increasing allocation for running on google cloud
|
|
12
|
39
|
August 20, 2024
|
|
Nextflow run stopped for uknown reason
|
|
2
|
50
|
August 20, 2024
|
|
Problem with disk space when running on nf tower
|
|
3
|
121
|
August 19, 2024
|
|
Is the parallelization working properly?
|
|
2
|
40
|
August 9, 2024
|
|
Starting Nextflow in a singularity container and use it to run another singularity container
|
|
0
|
74
|
July 12, 2024
|
|
Nextflow Error
|
|
5
|
236
|
July 1, 2024
|
|
Applied training: configuration of nf-core pipelines
|
|
1
|
37
|
June 27, 2024
|
|
Is there any comprehensive tutorial on config files/options and how to use them?
|
|
1
|
79
|
June 10, 2024
|
|
How to deal with ambguous outputs of a command-line process?
|
|
3
|
105
|
June 5, 2024
|
|
Dealing with executable docker image
|
|
4
|
205
|
May 29, 2024
|
|
How to see echo results in .command.out to debug a pipeline?
|
|
2
|
80
|
May 28, 2024
|
|
Cutandrun pipeline help :(
|
|
7
|
196
|
April 22, 2024
|
|
March 2025 nf-core hackathon
|
|
0
|
135
|
April 18, 2024
|
|
Nf-core/pangenome aws-megatests fail - maybe because of fusion or wave?
|
|
4
|
169
|
March 1, 2024
|
|
multiMap doesn't work in our pipeline with NXF 24.01.0-edge
|
|
3
|
175
|
February 13, 2024
|
|
Issue with the test that is using latest Nextflow version
|
|
2
|
168
|
February 8, 2024
|