Topics tagged nf-core

Topic	Replies	Views	Activity
Nextflow Training and nf-core Hackathon Barcelona 2025 Events nf-core , nextflow	0	14	July 15, 2025
Singularity error in downloaded pipeline Ask for help seqera-containers , singularity , nf-core	4	18	July 11, 2025
Help passing a tuple with paths as input for a process without splitting the files (Invalid method invocation 'call' with arguments: ...) Ask for help nextflow , nf-core	3	33	July 7, 2025
Are the nextflow codespaces not working? Ask for help nf-core , nextflow	11	13	July 7, 2025
StackOverflowError when chaining modules for nf-test Ask for help nf-test , nextflow , nf-core	3	19	June 24, 2025
Handling large numbers of processes in an HPC Ask for help nextflow , hpc , nf-core	2	39	June 19, 2025
Define task.ext.args per subworkflow Ask for help nextflow , nf-core	3	25	June 17, 2025
Nf-core/rnaseq v3.18.0 – Minimum‑55‑CPU rule, account suspensions & debug‑queue limits Ask for help nf-core , hpc , nextflow	3	41	May 23, 2025
Nf-core/scrnaseq help Ask for help nf-core	0	17	May 6, 2025
MultiQC timing out Ask for help multiqc , nf-core	6	56	April 30, 2025
CADD1.7.2 Docker image for nextflow Ask for help nf-core	0	19	April 23, 2025
How to wait for a subworkflow to complete before proceeding to another subworkflow? Ask for help nextflow , nf-core	3	39	April 23, 2025
Oncoanalyser: Ask for help nf-core , nextflow	4	42	April 16, 2025
Nextflow Podcast Ep. 50: Imaging pipelines and analysis, with Krešimir Beštak Events nf-core , nextflow-podcast , nextflow	0	33	April 3, 2025
Nextflow Podcast Ep. 49: Finding novel proteins at Seanome, with Olga Botvinnik Events nextflow-podcast , nf-core , nextflow	0	45	March 17, 2025
Nextflow CPU limit does not take effect Ask for help hpc , nextflow , nf-core	0	29	March 25, 2025
Nextflow stalls after version check Ask for help nf-core , nextflow	6	48	March 19, 2025
Nfcore/rnaseq pipeline never finishes Ask for help platform , aws , nf-core	2	57	March 13, 2025
RUNNING of NF-CORE/VIRAL RECON with custom primers, reference sequence and bed files Ask for help nf-core , nextflow	1	13	March 13, 2025
Own variant calling nextflow pipeline - error with Variant Recalibrator. Argument resource is missing Ask for help nextflow , nf-core	2	25	March 11, 2025
Upload to aws s3 fails Ask for help aws , nf-core	0	13	March 8, 2025
About stage from symbolink path Ask for help nf-core , nextflow	0	11	March 7, 2025
Problem with upload nf-core output on minio server Ask for help aws , nf-core	0	41	February 28, 2025
Fixing error: FastQ file for reads 1 must be provided, cannot contain spaces and must have extension Ask for help nf-core , nextflow	5	148	February 27, 2025
Looking for a way to trigger a Nextflow cleanup process (deleting input files) only after the entire workflow completes successfully—any ideas or best practices to handle this efficiently? Ask for help nf-core , nextflow , platform	7	466	February 18, 2025
Error when running RNASeq pipeline: ValueError: too many values to unpack (expected 3) Ask for help nf-core	0	26	February 8, 2025
Unable to Acquire Lock on Session - Already Moved /work Directory Ask for help ampliseq , nf-core , platform , aws , nextflow	0	59	February 3, 2025
Challenging Nextflow workflow - Need help please! Ask for help nextflow , nf-core	2	69	January 29, 2025
Samples mismatch issue while running nextflow module Ask for help nf-core , nextflow	1	34	January 27, 2025
Optional input path Ask for help nf-core	2	33	January 24, 2025