Topics tagged nf-core

Topic	Replies	Views	Activity
Singularity error in downloaded pipeline Ask for help nf-core , singularity , seqera-containers	5	63	September 27, 2025
Nextflow Training Week - Sep 22-26, 2025 Training nextflow , nf-core	6	179	September 23, 2025
Nf-core Hackathon in Barcelona Events nextflow , nf-core	0	30	September 17, 2025
RNAVAR nf-core pipeline: error on multiqc module Ask for help nextflow , nf-core	6	30	September 12, 2025
Error when trying to pull container Ask for help nextflow , nf-core	0	16	September 1, 2025
How to have more cpus or gpu? Ask for help nf-core	1	19	August 29, 2025
Is there a way to change the sorting behaviour in multiqc Ask for help multiqc , nf-core	2	14	August 22, 2025
Looking for a way to trigger a Nextflow cleanup process (deleting input files) only after the entire workflow completes successfully—any ideas or best practices to handle this efficiently? Ask for help nextflow , nf-core , platform	8	654	August 20, 2025
Running atacseq/2.1.2/ offline, issue with nf-validation plugin Ask for help nextflow , nf-core	3	19	August 18, 2025
Run StrainPhlAn with output from nf-core/taxprofiler x MetaPhlAn? Ask for help nf-core	0	13	August 12, 2025
Nextflow config to switching to GPU in nf-core/sarek pipeline Ask for help nextflow , nf-core , platform	3	99	August 8, 2025
Need help to setup the nf-core-rnaseq with google cloud Ask for help nextflow , nf-core	1	20	July 30, 2025
Help passing a tuple with paths as input for a process without splitting the files (Invalid method invocation 'call' with arguments: ...) Ask for help nextflow , nf-core	3	45	July 7, 2025
Are the nextflow codespaces not working? Ask for help nextflow , nf-core	11	77	July 7, 2025
StackOverflowError when chaining modules for nf-test Ask for help nextflow , nf-core , nf-test	3	32	June 24, 2025
Handling large numbers of processes in an HPC Ask for help nextflow , hpc , nf-core	2	57	June 19, 2025
Define task.ext.args per subworkflow Ask for help nextflow , nf-core	3	52	June 17, 2025
Nf-core/rnaseq v3.18.0 – Minimum‑55‑CPU rule, account suspensions & debug‑queue limits Ask for help nextflow , hpc , nf-core	3	56	May 23, 2025
Nf-core/scrnaseq help Ask for help nf-core	0	22	May 6, 2025
MultiQC timing out Ask for help multiqc , nf-core	6	64	April 30, 2025
CADD1.7.2 Docker image for nextflow Ask for help nf-core	0	23	April 23, 2025
How to wait for a subworkflow to complete before proceeding to another subworkflow? Ask for help nextflow , nf-core	3	57	April 23, 2025
Oncoanalyser: Ask for help nextflow , nf-core	4	57	April 16, 2025
Nextflow Podcast Ep. 50: Imaging pipelines and analysis, with Krešimir Beštak Events nextflow , nf-core , nextflow-podcast	0	36	April 3, 2025
Nextflow Podcast Ep. 49: Finding novel proteins at Seanome, with Olga Botvinnik Events nextflow , nf-core , nextflow-podcast	0	46	March 17, 2025
Nextflow CPU limit does not take effect Ask for help nextflow , hpc , nf-core	0	38	March 25, 2025
Nextflow stalls after version check Ask for help nextflow , nf-core	6	59	March 19, 2025
Nfcore/rnaseq pipeline never finishes Ask for help aws , nf-core , platform	2	65	March 13, 2025
RUNNING of NF-CORE/VIRAL RECON with custom primers, reference sequence and bed files Ask for help nextflow , nf-core	1	14	March 13, 2025
Own variant calling nextflow pipeline - error with Variant Recalibrator. Argument resource is missing Ask for help nextflow , nf-core	2	30	March 11, 2025