Topics tagged nf-core

Topic	Replies	Views	Activity
MultiQC timing out Ask for help multiqc , nf-core	5	38	April 23, 2025
CADD1.7.2 Docker image for nextflow Ask for help nf-core	0	13	April 23, 2025
How to wait for a subworkflow to complete before proceeding to another subworkflow? Ask for help nextflow , nf-core	2	16	April 23, 2025
Oncoanalyser: Ask for help nf-core , nextflow	4	35	April 16, 2025
Nextflow Podcast Ep. 50: Imaging pipelines and analysis, with Krešimir Beštak Events nf-core , nextflow-podcast , nextflow	0	27	April 3, 2025
Nextflow Podcast Ep. 49: Finding novel proteins at Seanome, with Olga Botvinnik Events nextflow-podcast , nf-core , nextflow	0	39	March 17, 2025
Nextflow CPU limit does not take effect Ask for help hpc , nextflow , nf-core	0	21	March 25, 2025
Nextflow stalls after version check Ask for help nf-core , nextflow	6	28	March 19, 2025
Nfcore/rnaseq pipeline never finishes Ask for help platform , aws , nf-core	2	36	March 13, 2025
RUNNING of NF-CORE/VIRAL RECON with custom primers, reference sequence and bed files Ask for help nf-core , nextflow	1	10	March 13, 2025
Own variant calling nextflow pipeline - error with Variant Recalibrator. Argument resource is missing Ask for help nextflow , nf-core	2	25	March 11, 2025
Upload to aws s3 fails Ask for help aws , nf-core	0	11	March 8, 2025
About stage from symbolink path Ask for help nf-core , nextflow	0	9	March 7, 2025
Problem with upload nf-core output on minio server Ask for help aws , nf-core	0	29	February 28, 2025
Fixing error: FastQ file for reads 1 must be provided, cannot contain spaces and must have extension Ask for help nf-core , nextflow	5	100	February 27, 2025
Looking for a way to trigger a Nextflow cleanup process (deleting input files) only after the entire workflow completes successfully—any ideas or best practices to handle this efficiently? Ask for help nf-core , nextflow , platform	7	308	February 18, 2025
Error when running RNASeq pipeline: ValueError: too many values to unpack (expected 3) Ask for help nf-core	0	22	February 8, 2025
Unable to Acquire Lock on Session - Already Moved /work Directory Ask for help ampliseq , nf-core , platform , aws , nextflow	0	41	February 3, 2025
Challenging Nextflow workflow - Need help please! Ask for help nextflow , nf-core	2	57	January 29, 2025
Samples mismatch issue while running nextflow module Ask for help nf-core , nextflow	1	31	January 27, 2025
Optional input path Ask for help nf-core	2	19	January 24, 2025
Nf-core create seems that utf8 is not supported Ask for help nf-core , nextflow	1	28	December 16, 2024
Resolving variable number of s3 paths in a list of lists fed to a process Ask for help nextflow , nf-core	4	32	December 2, 2024
Field 'computeEnvId' is not writable: unset or use previous value: nf-core ampliseq Ask for help nf-core , ampliseq , nextflow	1	27	November 15, 2024
Wave invalid response: [400] {"Container image does not exist or access is not authorized"} Ask for help nf-core , nextflow	7	147	November 1, 2024
Non-aws S3 bucket won't be picked up by nextflow Ask for help nf-core , aws , nextflow	2	33	October 21, 2024
On methylseq pipeline, how to specify a different library length for bismark? Ask for help nf-core	2	22	October 16, 2024
Command error: `touch: .command.trace: Permission denied` when running on docker Ask for help nf-core	4	314	October 12, 2024
Awscli can't find libz share object file when running nextflow workflow on AWS Batch Ask for help nf-core , aws	2	40	October 12, 2024
Using a program to pre-process the samplesheet Ask for help nf-core	4	50	October 9, 2024