My rnaseq pipeline seems to run, but I am not seeing any results folder after running fastqc

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1

I am testing my pipeline with the nf4-science training module. After writing my fastqc.nf script and run the pipeline, I am getting something like:

N E X T F L O W ~ version 25.04.3

Launching rnaseq.nf [trusting_engelbart] DSL2 - revision: b7d2fbf4c6

And my results folder and output folder are nowhere to be found. Does anyone knows what could be happening?

2

Hey Roxy_J!
Could you please provide the following:

  1. your fastqc.nf file
  2. how do you use the module (with github codespaces or local installation)?