In my nextflow process named Predict
the predict.sh
script calls the read_json.py
script. The issue is that the read_json.py
file (that I have stored in bin
and made executable) is not found. What might be the problem?
Later, as expected, based on the instructions in the predict.sh
, the data directory all_models
is found empty and causes python to exit the program.
ERROR ~ Error executing process > 'Predict (1)'
Caused by:
Process `Predict (1)` terminated with an error exit status (1)
Command executed:
predict.sh data.json weights.ckpt
cat <<-END_VERSIONS > versions.yml
"Predict":
python: $(python --version 2>&1 | sed 's/Python //g')
END_VERSIONS
Command exit status:
1
Command output:
Directory all_models is empty.
Command error:
python: can't open file 'read_json.py': [Errno 2] No such file or directory
Directory all_models is empty.