Using the nf-test framework, I am accessing remote files for inputs to the tests. I have recently begun to encounter errors related to file access / download (e.g., ERROR ~ No such file or directory: https://raw.githubusercontent.com/...). I have tested extensively with these before, and have had no issues. I believe this is related to the degree of activity on my HPC, and it would be nice to simply retry these type of failures with back-off.
Is there a way to have Nextflow retry input file staging?
I know that you can retry processes, but this is not staging in a process, it is at the workflow level:
Here is the error specifics:
Check script '<redacted>/workflows/wgs.nf' at line: 80 or see '.nf-test/tests/85f69340fae4c75830dd11be32039399/meta/nextflow.log' file for more details