Hi ,I am am trying to run nf-core sarek but keep getting error:ERROR ~ Error executing process >
NFCORE_SAREK:SAREK:FASTQ_ALIGN_BWAMEM_MEM2_DRAGMAP_SENTIEON:BWAMEM1_MEM (ERX14569962)
Caused by:Process input file target path must be relative
I specify my workDir in config:
workDir = 'gs://dog-pipeline-test-example-data-workdir'
But when nf-core prints out params that differ from default:
workDir :
its blank
I’ve run other pipelines on google-cloud with same workdir with no problem.
I am using Nextflow version 24.10.4