Hi, Seqera community. When running a pipeline with CLI, runs are failed/canceled and I already checked the state with slurm. But the state is still running on Seqera. The success run’s state is success normally. [image] As I see, this phenomenon especially happens with this pipeline. What are t…

If the Nextflow process is forcibly killed, it cannot report back to the Platform that the jobs have terminated. To force-kill the task from the Platform side, you can use the API directly and use the force=true parameter. You’ll need: The run id (which you can pull from the run url) The workspace…

Zombie runs, jobs has been killed in local but state is still running on Seqera

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alanwilter (Alan Silva) March 28, 2025, 8:54am 3

I have the same problem, how to remove these zombies?

If Azure Batch has an issue, a Run can be stuck in the Running state indefinably

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Zombie runs, jobs has been killed in local but state is still running on Seqera

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