Topics tagged hpc

Topic	Replies	Views	Activity
Handling SLURM Node Evictions in Nextflow: A Simple Retry Strategy Tips & Tricks nextflow , hpc , config , slurm	1	40	May 1, 2026
Handling large numbers of processes in an HPC Ask for help nextflow , hpc , nf-core	2	122	June 19, 2025
Jobs marked as failed by nextflow but slurm exit code 0 Ask for help nextflow , hpc	0	178	June 9, 2025
How to store and share nextflow/nfcore results files Ask for help hpc , general	1	102	June 9, 2025
Cleanup and publishing performance Ask for help nextflow , hpc	4	107	May 27, 2025
Nf-core/rnaseq v3.18.0 – Minimum‑55‑CPU rule, account suspensions & debug‑queue limits Ask for help nextflow , hpc , nf-core	3	117	May 23, 2025
Nextflow CPU limit does not take effect Ask for help nextflow , hpc , nf-core	0	84	March 25, 2025
Nextflow 16sHiSeq workflow in a SGE cluster Ask for help nextflow , hpc	4	150	October 4, 2024
GPU selection with HPC scheduler and singularity containers Ask for help nextflow , hpc	1	136	August 29, 2024
Sbatch fatal error when mem-per-cpu is included and not when not included Ask for help nextflow , hpc	1	214	August 19, 2024
Error on selecting a specific output from a process that outputs multiple files, and pass it to the next process? Ask for help nextflow , hpc	6	486	August 11, 2024
Singularity qiime2 container - qiime command not found Ask for help nextflow , hpc	9	198	August 3, 2024
Create jobs on Seqera Cloud and run on local server Ask for help hpc , platform	4	168	July 30, 2024
My first nextflow script, I'm getting alot of errors with every process - Is my approach wrong? Ask for help nextflow , hpc	1	173	July 18, 2024
Question about Nextflow and SLURM Ask for help nextflow , hpc	1	256	May 30, 2024
Platform launch folders and concurrent Nextflow runs Ask for help hpc , platform , slurm	1	340	April 23, 2024
Slurm killing platform jobs Ask for help hpc , platform , slurm	3	410	April 8, 2024
Little discrepancies between results from normal and its optimized workflow Ask for help hpc , platform , optimization , slurm , reproducibility	1	238	January 30, 2024
Slurm node overhead Ask for help hpc	2	340	January 29, 2024
Save as pipeline requirements Ask for help hpc , platform	6	278	January 23, 2024
Slurm tower connection issue Ask for help hpc , platform , slurm	3	333	January 18, 2024
Tearing down a orchestration before completion of the workflow Ask for help nextflow , hpc	3	250	January 6, 2024
Handling lots of IO (large files or lots of small files) on HPC systems Ask for help hpc	1	365	December 18, 2023
Deploying tower -agent on HPC without root access Ask for help tower , hpc , platform , slurm	6	396	December 5, 2023
Resume run with changed head job configuration Ask for help hpc , platform , slurm	6	392	October 26, 2023