After my first attempt “nf-core modules list remote”, the cloning process was interupted and after that if I tried so the only message I got was:
CRITICAL Branch ‘master’ not found in ‘GitHub - nf-core/modules: Repository to host tool-specific module files for the Nextflow DSL2 community!’
Where is that repo cloned to and how can I refresh this process?
The repo is cloned to $HOME/.nextflow/assets/nf-core. I assume deleting the nf-core folder will fix this, but without a reproducible environtment of your situation it is hard to predict.
Thank you! For version 3.0.2 on a Debian system, it’s actually located under $HOME/.config/nfcore/nf-core/and deleting it did fix the problem
I’m sorry, you’re correct. $HOME/.nextflow/assets is for assets pulled by Nextflow (if you run nextflow run nf-core/rnaseq -profile test, docker --outdir results, for example, the pipeline will be pulled to $HOME/.nextflow/assets).
For assets managed by the nf-core tools, it’s $HOME/.config/nfcore.
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