Hi,
I ran a WGS pipeline I wrote on AWS batch, launching locally on my computer. The config file had all the information necessary to execute on AWS batch.
Strangely, one of the processes which was calling deepvariant didn’t complete. But I didn’t get any error messages in my .command* files for the process. Did I get kicked off of my spot instance? It’s a little difficult to debug if I can’t identify any error messages