Hi,
I’m working on setting up a slurm compute environment for my local HPC cluster inside seqera cloud.
One of the requirements is “Nextflow runtime version 22.10.0 (or later) must be pre-installed in the cluster”
When I run nf-core workflows using bash/slurm submission scripts, I activate a conda environment that contains nextflow and nf-core. this environment was created with a command like:
conda create --name nf_env nextflow nf-core
As a result, nextflow (and nf-core) is not installed on my cluster.
Is there a way to use my conda environment in the seqera cloud compute environment setup?
thanks
Charlie