Unable to parse pipeline config

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1

Trying to run a pipeline via Seqera Cloud but facing error?

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"Unable to parse pipeline config - name=GitHub - nf-core/rnaseq: RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control. - Cause: startup failed:
Script333961040842455.groovy: 23: Unexpected character: ‘’ @ line 23, column 12.
bih { includeConfig “${params.custom_config_base}/conf/bih.config” }
^

1 error"

Now sure how to move past it, any help will be appreciated :pray:

2

Hi @animesh

We detected an issue on includeConfig parsing and will be releasing a patch in minutes. Will update once it’s done. Sorry for the inconvenience

2 Likes
3

Hi @animesh
Should be fixed now, thanks for reporting

4

Thanks for such an awesome support :pray: