Topics tagged nextflow

Topic	Replies	Views	Activity
Vscode extension: unrecognized config option for custom plugin Ask for help nextflow	2	17	December 21, 2024
Replacement for nf_core `check_max` function with new nextflow vscode extension Ask for help nextflow	6	26	December 19, 2024
How to format long string using vscode extension Ask for help nextflow	0	4	December 18, 2024
Proper way to utilize >1 GPUs in a single machine? Ask for help nextflow	4	196	December 16, 2024
Nf-core create seems that utf8 is not supported Ask for help nf-core , nextflow	1	13	December 16, 2024
Using a launch script to run nextflow Tips & Tricks nextflow	0	26	December 12, 2024
AWS Batch - migration to graviton - implications on wave performance Ask for help aws , nextflow , wave	3	16	December 12, 2024
Form channel content using a function in the .map{} operator Ask for help nextflow	0	5	December 10, 2024
When clause depreciated. What's a good alternative? Ask for help nextflow	5	24	December 10, 2024
Assistance Required for Error in “Nextflow for Newcomers” Tutorial (Part 3: Hello Genomic) Ask for help nextflow	1	9	December 10, 2024
Applying tags to output files in subdirectories on S3 Ask for help nextflow , aws	0	4	December 10, 2024
Can process tasks read/write a shared path directly with Fusion? Ask for help fusion , nextflow	5	39	December 9, 2024
Input parameters pipeline launch Ask for help platform , nextflow	3	15	December 5, 2024
Nextflow Docker thin pool error Ask for help nextflow	3	23	December 4, 2024
Show cached tasks in nextflow run preview Ask for help nextflow	8	25	December 4, 2024
Pipeline completes on AWS batch but one process didn't complete and no errors Ask for help aws , nextflow	0	12	November 27, 2024
Seqera cloud pipeline gets stuck in runnable Ask for help ampliseq , aws , nextflow	2	29	November 27, 2024
Inability to parallelize sequential processes Ask for help nextflow	4	30	December 3, 2024
Resolving variable number of s3 paths in a list of lists fed to a process Ask for help nextflow , nf-core	4	25	December 2, 2024
DAG files not being generated Ask for help nextflow	0	9	November 20, 2024
RNAseq pipeline not terminating Ask for help aws , nextflow	4	29	November 20, 2024
How can I assign a default channel to another channel if it’s empty, while retaining its original content when it’s not empty, considering the default value is also a channel? Ask for help platform , nextflow	5	28	November 19, 2024
Converting a pipeline from docker to singularity, Not able to access matplotlib/fontlist-v330 Ask for help singularity , nextflow	1	17	November 19, 2024
Problems with $HOME/.nextflow/scm file and accessing private GitHub repo Ask for help nextflow	3	28	November 18, 2024
Troubleshooting why Nextflow is not capturing an Out of Memory (OOM) error (exit status 137) in a piped command within a process Ask for help nextflow , platform	3	59	November 18, 2024
Read & Write to 2 different S3 buckets Ask for help aws , nextflow	2	92	November 17, 2024
Confidential Containers Ask for help nextflow	0	12	September 19, 2024
Using 2 AWS Batch Compute Environments within a single pipeline Ask for help nextflow , aws , platform	3	34	November 22, 2024
Reading an input file from a public-only S3 bucket Ask for help aws , nextflow	1	30	November 15, 2024
AccessDeniedException with docker + slurm on AWS Ask for help aws , slurm , nextflow	1	15	November 15, 2024