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Dealing with multiple types of sample sheets
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5
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177
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August 21, 2024
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Input cardinality issue after collect
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5
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176
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February 22, 2024
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How to pass a directory path as input and build a channel from it in nextflow?
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3
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213
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January 14, 2025
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Cannot get dump to print variable
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5
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172
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February 29, 2024
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Handling single sample failures
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2
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243
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April 4, 2024
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Pipeline getting frozen (nf-core)
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3
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210
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September 2, 2024
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How do I make categorical values from integers?
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6
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158
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May 1, 2024
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Downstream processing from nf-core/rnaseq before ML analysis
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1
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294
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December 18, 2023
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Variable defined w/ def gives "Missing name with which to set the channel variable"
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3
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201
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March 22, 2024
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Ln: failed to create symbolic link Operation not supported
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1
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285
|
September 2, 2024
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Nf-core/pangenome aws-megatests fail - maybe because of fusion or wave?
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4
|
179
|
March 1, 2024
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Issue with nf-core/taxprofiler Pipeline Stuck in Runnable Status on AWS Batch
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1
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281
|
December 4, 2023
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Nextflow cli as a library?
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6
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48
|
April 23, 2025
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Memory allocation issue
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3
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196
|
March 27, 2024
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Custom content
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6
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148
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June 24, 2024
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Unable to run parallel threads
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4
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173
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April 23, 2024
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Problem with disk space when running on nf tower
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3
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193
|
August 19, 2024
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Number formatting "comma" doesn't seem to work
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3
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193
|
January 16, 2024
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How to add violin plot toggle to all MultiQC tables
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2
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221
|
March 3, 2024
|
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Slurm jobs not being submitted
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6
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142
|
July 24, 2024
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Zombie runs, jobs has been killed in local but state is still running on Seqera
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7
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130
|
April 1, 2025
|
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How to use collect on two process and do a join?
|
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4
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164
|
March 13, 2024
|
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Studio session restart from checkpoint fails
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8
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121
|
March 7, 2025
|
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AWS Batch job stuck at runnable when using a compute environment that would enable use of a GPU (A10) -> which next step to take?
|
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3
|
180
|
March 27, 2025
|
|
Getting Nextflow to detect docker engine
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|
7
|
127
|
June 1, 2024
|
|
Platform launch folders and concurrent Nextflow runs
|
|
1
|
253
|
April 23, 2024
|
|
How to process multiple runs of featurecounts in the same directory where each run used a differnt gtf file
|
|
7
|
124
|
June 15, 2024
|
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Create channel after collect from channel that has multiple files?
|
|
8
|
115
|
April 24, 2024
|
|
Automating my nextflow pipeline running on Azure batch
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|
1
|
243
|
January 26, 2024
|
|
Pipeline only processes first element of channel
|
|
2
|
198
|
May 21, 2024
|
|
Troubleshooting why Nextflow is not capturing an Out of Memory (OOM) error (exit status 137) in a piped command within a process
|
|
3
|
172
|
November 18, 2024
|
|
How to access/print elements of a map?
|
|
3
|
168
|
January 12, 2024
|
|
FastQC read quality scores in general stats table
|
|
5
|
137
|
April 19, 2024
|
|
Get the number of available cpus in a process
|
|
7
|
118
|
October 17, 2024
|
|
Problems using Nextflow to run NanoRtax Pipeline
|
|
1
|
236
|
April 3, 2024
|
|
Using fusion with AWS batch and s3 buckets across multiple accounts
|
|
2
|
192
|
May 7, 2024
|
|
Advice on best practices for submitting processes that wait for others to complete before starting
|
|
3
|
166
|
March 21, 2024
|
|
JupyterLab Studio session keeps throwing "Server Connection Error" popup
|
|
8
|
111
|
March 4, 2025
|
|
Local executor processor utilisation
|
|
2
|
187
|
February 26, 2024
|
|
Reports with large sample numbers
|
|
1
|
226
|
December 15, 2023
|
|
Create a better DAG file
|
|
4
|
140
|
June 1, 2024
|
|
Resume not loading retries from cache
|
|
8
|
106
|
January 16, 2025
|
|
Ln: failed to create symbolic link
|
|
3
|
155
|
March 15, 2024
|
|
Process input that is not cached and does not affect task hash
|
|
8
|
58
|
October 9, 2024
|
|
Adding glimpse support
|
|
4
|
137
|
April 17, 2024
|
|
How to access attributes from subMap and branch to print
|
|
4
|
136
|
February 29, 2024
|
|
Multi-channel output cannot be applied to operator combine
|
|
3
|
152
|
October 24, 2024
|
|
How to get more informative log - pipeline trace?
|
|
3
|
151
|
February 26, 2024
|
|
Parsing both lane split and full run sample names on fastp
|
|
3
|
150
|
May 6, 2024
|
|
Replacement for nf_core `check_max` function with new nextflow vscode extension
|
|
7
|
107
|
December 19, 2024
|