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Resume failing due to change in wave container path
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15
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230
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August 15, 2024
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Getting Unexpected input: '{' Error, but neither I or github copilot can find any syntax error
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12
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288
|
July 1, 2024
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Nextflow pipeline fails on AWS because it can't find executable in Docker container
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9
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252
|
August 30, 2024
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Nextflow Training Week (2025-Q1)
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6
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2949
|
March 9, 2025
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Too many error with VScode extension
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11
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162
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November 25, 2024
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Nextflow: command not found
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9
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166
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April 28, 2025
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Samtools coverage output not found by multiqc
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9
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175
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June 28, 2024
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Singularity qiime2 container - qiime command not found
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9
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96
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August 3, 2024
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Platform behaving differently for participants in same workspace
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11
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121
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March 5, 2025
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Increasing allocation for running on google cloud
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12
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64
|
August 20, 2024
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Shared memory bug?
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10
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55
|
August 14, 2024
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Run the latest release of a pipeline automatically
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12
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49
|
December 19, 2024
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Change report file folder
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11
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57
|
November 14, 2024
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Why do the structures seem to differ between the multiqc report and usage in a notebook?
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11
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56
|
November 11, 2024
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CannotInspectContainerError when launching jobs from localhost to run on AWS Batch
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9
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43
|
February 7, 2025
|
|
Nextflow Training Week Instructions
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1
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497
|
February 24, 2025
|
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nf-4Bioimage Workshop: Nextflow for Bioimage Analysis
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0
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115
|
August 29, 2024
|
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Composing strings based on multiple conditions
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0
|
64
|
February 27, 2025
|
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Native Terminal Notifications on Pipeline completion
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2
|
70
|
November 6, 2024
|
|
What is your Nextflow emacs setup?
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3
|
284
|
November 8, 2024
|
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Using Nextflow Language Server in editors that support LSP but are not VSCode
|
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7
|
200
|
May 30, 2025
|
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More advanced learning of nf-core and nextflow
|
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4
|
148
|
July 18, 2024
|
|
Announcement for the October meeting of the #Animal-Genomics group
|
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0
|
67
|
October 16, 2024
|
|
LLM summaries for multiqc reports
|
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8
|
156
|
March 28, 2025
|
|
Connecting / Chaining existing Nextflow workflows in a meta workflow
|
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1
|
134
|
July 25, 2024
|
|
Better practices using MultiQC in Quarto Notebooks for sets of images
|
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8
|
119
|
March 28, 2025
|
|
GATK.GRCh38 vs GRCh38
|
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4
|
328
|
July 19, 2024
|
|
Divide-and-conquer strategy to call problematic regions
|
|
0
|
42
|
February 11, 2025
|
|
How to skip specific/failed samples on next `-resume`
|
|
2
|
88
|
April 16, 2025
|
|
Wave invalid response: [400] {"Container image does not exist or access is not authorized"}
|
|
7
|
170
|
November 1, 2024
|
|
Nextflow Error
|
|
5
|
406
|
July 1, 2024
|
|
Looking for a way to trigger a Nextflow cleanup process (deleting input files) only after the entire workflow completes successfully—any ideas or best practices to handle this efficiently?
|
|
7
|
399
|
February 18, 2025
|
|
Handling Unordered CSV
|
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0
|
35
|
January 26, 2025
|
|
Nextflow language server errors
|
|
7
|
193
|
November 6, 2024
|
|
Managing GPU Resources in Nextflow Pipeline on PBSPro
|
|
0
|
148
|
June 12, 2024
|
|
Not a valid path value type?
|
|
6
|
286
|
July 13, 2024
|
|
Source another R script in the `bin/` directory
|
|
2
|
218
|
April 23, 2025
|
|
Using conda environments in singularity containers with nextflow
|
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4
|
272
|
September 17, 2024
|
|
Running workflow on multiple samples
|
|
4
|
253
|
August 12, 2024
|
|
Error on selecting a specific output from a process that outputs multiple files, and pass it to the next process?
|
|
6
|
234
|
August 11, 2024
|
|
How to pass a directory path as input and build a channel from it in nextflow?
|
|
3
|
273
|
January 14, 2025
|
|
PyPI package not found
|
|
5
|
49
|
August 20, 2024
|
|
Invalid method invocation call with arguments
|
|
5
|
247
|
August 3, 2024
|
|
Prevent nextflow from running a process if the output file exists
|
|
1
|
113
|
February 8, 2025
|
|
Ln: failed to create symbolic link Operation not supported
|
|
1
|
302
|
September 2, 2024
|
|
Pipeline getting frozen (nf-core)
|
|
3
|
231
|
September 2, 2024
|
|
Nextflow cli as a library?
|
|
6
|
53
|
April 23, 2025
|
|
Dealing with multiple types of sample sheets
|
|
5
|
187
|
August 21, 2024
|
|
Nextflow ERROR ~ Cannot read write-only property: from
|
|
4
|
215
|
November 15, 2024
|
|
AWS Batch job stuck at runnable when using a compute environment that would enable use of a GPU (A10) -> which next step to take?
|
|
3
|
204
|
March 27, 2025
|