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Using a launch script to run nextflow
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0
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69
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December 12, 2024
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Slurm jobs not being submitted
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6
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155
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July 24, 2024
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Problem with disk space when running on nf tower
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3
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207
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August 19, 2024
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Troubleshooting why Nextflow is not capturing an Out of Memory (OOM) error (exit status 137) in a piped command within a process
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3
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190
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November 18, 2024
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Zombie runs, jobs has been killed in local but state is still running on Seqera
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7
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155
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April 1, 2025
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Get the number of available cpus in a process
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7
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133
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October 17, 2024
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Custom content
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6
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161
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June 24, 2024
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Importing a jar file into a workflow
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5
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54
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September 21, 2024
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How to process multiple runs of featurecounts in the same directory where each run used a differnt gtf file
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7
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127
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June 15, 2024
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Replacement for nf_core `check_max` function with new nextflow vscode extension
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7
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127
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December 19, 2024
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Installing R packages in a Rstudio image with singularity
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1
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215
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October 25, 2024
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Using 2 AWS Batch Compute Environments within a single pipeline
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3
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74
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November 22, 2024
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Multi-channel output cannot be applied to operator combine
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3
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175
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October 24, 2024
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Assistance Needed for Configuring SLURM to Utilize GPUs in VM for AlphaFold
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2
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100
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October 8, 2024
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Getting Started: Disk and Memory Management Questions
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1
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233
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September 25, 2024
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Checking contents of ParamsMap with 'Access to undefined parameter' warning?
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3
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138
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July 1, 2024
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Comments Within Process Removed
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5
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44
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December 9, 2024
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Resume not loading retries from cache
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8
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120
|
January 16, 2025
|
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Nextflow run does not pick up parameters submitted via Seqera platform
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2
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168
|
July 8, 2024
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Fixing error: FastQ file for reads 1 must be provided, cannot contain spaces and must have extension
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5
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133
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February 27, 2025
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How to sort tuples
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4
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130
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June 13, 2024
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Linter using the Nextflow Language Server
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6
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118
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May 26, 2025
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Recommended way of passing a file that lists filenames as input to a process
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1
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55
|
September 11, 2024
|
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SIngle nextflow job vs the executor
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2
|
146
|
August 9, 2024
|
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Studio session restart from checkpoint fails
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8
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132
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March 7, 2025
|
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Optional publishable output?
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7
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99
|
July 2, 2024
|
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Nextflow language server v1.0.1 - fails parsing a main.nf
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3
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42
|
November 29, 2024
|
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Process input that is not cached and does not affect task hash
|
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8
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64
|
October 9, 2024
|
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Adding custom data to multiqc
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7
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107
|
March 28, 2025
|
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Fixing race condition when channel items altered by later subworkflow are seen by earlier one
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4
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35
|
August 2, 2024
|
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Missing RDS Missing output file(s)
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3
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131
|
June 7, 2024
|
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Option run_modules broken in latest version (1.22.2)
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7
|
80
|
June 20, 2024
|
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Minimally Reproducible Conda Set Up For Nextflow
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1
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47
|
October 11, 2024
|
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Renaming large files causing possible Fusion error
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4
|
130
|
July 12, 2024
|
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JupyterLab Studio session keeps throwing "Server Connection Error" popup
|
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8
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121
|
March 4, 2025
|
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Sbatch fatal error when mem-per-cpu is included and not when not included
|
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1
|
136
|
August 19, 2024
|
|
Gitlab token not working when MFA is enabled
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3
|
107
|
June 17, 2024
|
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Nextflow installation with micromamba seems broken
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4
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92
|
September 10, 2024
|
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Icons for pipelines in workspace
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2
|
39
|
August 6, 2024
|
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What editor are you guys using for nextflow?
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3
|
106
|
August 29, 2024
|
|
Podman Permission Issues on Lifebit Platform
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1
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54
|
February 10, 2025
|
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RNA-Seq pipeline fails early
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3
|
95
|
October 8, 2024
|
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Forcing processes to wait for each other
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7
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70
|
August 16, 2024
|
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Launch Seqera cloud but run on my own machine!
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2
|
61
|
January 14, 2025
|
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MultiQC does not find picard rnaseqmetrics files
|
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1
|
130
|
June 13, 2024
|
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Seqera Platform Compute Environment error
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|
8
|
90
|
March 31, 2025
|
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Get method on LinkedHashMap modifies the hashmap
|
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4
|
92
|
July 8, 2024
|
|
Create jobs on Seqera Cloud and run on local server
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|
4
|
94
|
July 30, 2024
|
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File is not being staged into work directory
|
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2
|
108
|
June 13, 2024
|
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Dragen module broken in latest version
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6
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71
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June 18, 2024
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